Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00013 ATGATTCCCAGTGACCCCTTTTCACTATCCACAAACACAAACCCTAACCCTAATCCCCCTCCAACCACCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTCTTTCACCAAAGACACTCATGGCCACGAACAGGTTCATCTGTGAAATATGCAACAAAGGGTTTCAGAGGGATCAGAACCTTCAGCTTCACAGAAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAGGAGGTGCGGAAGAAGGTATATATCTGCCCGGAGAAGACCTGCGTCCACCATGACGCCGCCAGAGCACTCGGCGACCTCACCGGAATAAAGAAGCATTTCAGCAGAAAACACGGCGAAAAGAAGTGGAAGTGTGACAAGTGTTCGAAGAAATACGCAGTCCAATCTGATTGGAAAGCTCACACCAAAACTTGTGGCACTAGAGAATATAAGTGTGACTGTGGCACCCTCTTCTCTAGGAAAGACAGCTTTATTACCCACAGAGCATTTTGTGATGCCTTAGCTGAAGAGAGTGCGAAAGTCACTTCAGTTGCTACAACAAATCTAAGTTTTAAGAGTGAAGAGACAACTGTGGTGAATACACAGCCTGATTTGGCTCATGGATTTGGTGCACATGGTTTTAATATAGATTTTAATGGAATGAGCATGGGTGCAGACAACCAAATGCTAAGCTTGTCACTTTGGTTGAACCAGGGAAATCCTCATATTTATCCACTTGATCATGTGTCATCAAGTTCTTCGTGTTTTCCTGAGGTTATGCAAATGGCACAAGCTAATGCTTTAATTGGTTCTTCTTCACTATTGTCAAATTTTGGAATGCAAGCTTCCACTTCAATGACTTCATCTAATGCAAAACTTTCATTATCGCCATTACCAATTGGGAAAAAGGGAGAAAGTGGAAATGCAGATTTGGTGTCTATTTATTCAGAGAGTCAAAACAAGCAATCAAAGTTATCTTCTCCAATGTCAGCCACTGCGCTTCTACAGAAGGCAGCACAGATGGGTTCAACCAGAAGCACTAACCCGTCCATTTTCAATGACAGTTTTGGAGTAATGAACTCATCTTACACCCAAACTACTGGTCTCAATAGCAATGCCATTCCCAACCGAAACCAAAACAGTGATGAGCTTAACCAGGCTTATCAGAATATGAACCAACACGGGAATTTTAGTCCAACTAGCAGTGCAGCTATGCTGGGTGGTTCTACTAACTTTAGCTCATTGATATACTCATCAAACAGTTTTGATCATTTGATGATGCAAACCAATGTGAAACCAAGTGAGCCAATGCAATTGAAGCTTCATCGTGGTTCAAACTCTGCAGAACATAACATGACAAGAGATTTTCTTGGCGTGGGTGGAGGAGGAGCTGCAGGCCATCCATTCCTACCCCAAGAGTTGGCAAAGTTTGCTTCCATAGGCTCATCAATGGGTTTGAACCATTTCACTGCAGGCCATCAATGA 1503 0.4351 MIPSDPFSLSTNTNPNPNPPPTTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESAKVTSVATTNLSFKSEETTVVNTQPDLAHGFGAHGFNIDFNGMSMGADNQMLSLSLWLNQGNPHIYPLDHVSSSSSCFPEVMQMAQANALIGSSSLLSNFGMQASTSMTSSNAKLSLSPLPIGKKGESGNADLVSIYSESQNKQSKLSSPMSATALLQKAAQMGSTRSTNPSIFNDSFGVMNSSYTQTTGLNSNAIPNRNQNSDELNQAYQNMNQHGNFSPTSSAAMLGGSTNFSSLIYSSNSFDHLMMQTNVKPSEPMQLKLHRGSNSAEHNMTRDFLGVGGGGAAGHPFLPQELAKFASIGSSMGLNHFTAGHQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00013 500 Pfam Zinc-finger double-stranded RNA-binding 53 75 IPR022755 -
Gabi4483g00013 500 Gene3D Classic Zinc Finger 108 187 - -
Gabi4483g00013 500 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 478 IPR031140 -
Gabi4483g00013 500 FunFam protein indeterminate-domain 12-like 32 100 - -
Gabi4483g00013 500 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Gabi4483g00013 500 FunFam protein indeterminate-domain 5, chloroplastic-like 107 186 - -
Gabi4483g00013 500 Gene3D Classic Zinc Finger 31 107 - -
Gabi4483g00013 500 SMART c2h2final6 53 75 IPR013087 -
Gabi4483g00013 500 SMART c2h2final6 129 149 IPR013087 -
Gabi4483g00013 500 SMART c2h2final6 94 124 IPR013087 -
Gabi4483g00013 500 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Gabi4483g00013 500 MobiDBLite consensus disorder prediction 1 35 - -
Gabi4483g00013 500 SUPERFAMILY beta-beta-alpha zinc fingers 52 149 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00013 Gabi-Chr4483 56582 58337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00013 22 487 IDZ Gene Family AT5G03150 48.503 9.63e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4483g00013 zf-C2H2_jaz 7.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00013 K25870 - gmx:100812495 686.797