Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00012 ATGGACAAAGATCCTAATTTAGAAATCCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGATGAGGAGCTCATTGTTCACTATCTGAGAAACAAAGTGACTTCATCTCCCCTTCCAGCTTCATTCATAGCTGAAATAGATCTTTACAAGAATAATCCATGGGAGCTCCCAAGTAAAGCATTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCTAGAGACAGAAAGTATCCCAATGGAGTGAGGCCTAACAGAGCAGCTGGTTCAGGTTATTGGAAGGCTACTGGGACTGACAAACCTATTCTTACTTCCTGTGGAATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGACGTCCACCCAAAGGATCTAAAACTGACTGGATCATGCACGAGTATAGGTTGCATGATTCATTGATCTTGAATTCCAAGCAAAGAAGGTCTATGAGACTGGATGAATGGGTGCTATGCCGGGTTCGACAAAAAATCAGCAACCCAAGAAGCATTTGGGAAGATTCAAATGAACTTAGTTATGAACCAATTACAAGCCACTTTCAACAAATGAATGAGAACTCTAATCTTGAACCAGTCAAAATCTCTCTGCAGAATGAATATCCAATGTTACCTTATATTCTGGCTTCTGAGAGTACTCTGCCTAATTCCATTGGAATGGCCTCAAGCTCACGCTCTTGTTGTAATGATGATATAAAAGAATATGCTTCATTGCATGAAGACAACTTAAACATAGTAGGAGCACAGTTCTTAGCATCTGCAGCTGAGGGCTTCTTTAATCCGCTGAAGAGAAAAGCCATTGAAGAAAATCAGTTGGACCTTTATGCTCCCCTCAATAAAATACTAAGGAAAGAAGTTGATGATGGAAAGCAAAAACTTGAAATAGATGTAAGCAAAGGGTACAATTTCAACAACTTTGAGCATTGGACTTCCATTATACAACCTCAAGAGCTTAATGGCTTAGCCTTCACGGGATATACATGA 1005 0.404 MDKDPNLEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKNNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSLILNSKQRRSMRLDEWVLCRVRQKISNPRSIWEDSNELSYEPITSHFQQMNENSNLEPVKISLQNEYPMLPYILASESTLPNSIGMASSSRSCCNDDIKEYASLHEDNLNIVGAQFLASAAEGFFNPLKRKAIEENQLDLYAPLNKILRKEVDDGKQKLEIDVSKGYNFNNFEHWTSIIQPQELNGLAFTGYT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00012 334 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Gabi4483g00012 334 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Gabi4483g00012 334 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Gabi4483g00012 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 222 - -
Gabi4483g00012 334 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Gabi4483g00012 334 FunFam NAC domain-containing protein 72-like 20 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00012 Gabi-Chr4483 38162 39563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00012 10 174 NAC Transcription Factor Family AT1G61110 68.208 1.18e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4483g00012 NAM 8.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00012 - - gmx:100788799 561.992