Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00011 ATGAGCGTCATCGACATTCTCACCAGAGTTGACTCGATTTGTAAGAAGTACGACAAATACGACGTCGAAAAGCAAAAGGATTCCAATTTGTCCGGCGACGATGCCTTCGCCAGACTCTACGCCGTCGTCGACGCCGACATCGAGGCCGCGCTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAAGTAGGGCATCTACTGTAGCGATCAATGCTGAGATTCGTCGTACCAAGGCTAGGTTGCTCGAGGAGGTACCGAAGTTGCAGAGGTTGGCTGTGAAAAAGGTAAAGGGACTTTCATCACAAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCTTTGCCGGATAGGATCCAAGCTATCCCAGATGGGACCCCTGCTGCACCCAAACAAACTGGAGGTTGGGCAGCTTCTGCCTCACGTCCTGAAATTAAATTTGATTCAGATGGGCGATTTGATGATGAATATTTCCAACAAACTGAAGAAACAAGTCAATTCAGGCAGGAGTATGAAATGCGTAAAATAAAACAGGATCAAGGTTTGGATGTGATTGCTGAAGGATTGGATACTTTGAAAGACATGGCACATGATATGAATGAGGAAATGGATAGACAAGTTCCACTGATGGATGAGATTGATACGAAGGTGGACAAGGCATCCTCAGACCTTAAGAATACCAATGTTAGACTTAAAGACACGGTGAACCAGCTTCGATCCAGTCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAATGTGCTAAAGAAATGA 798 0.4424 MSVIDILTRVDSICKKYDKYDVEKQKDSNLSGDDAFARLYAVVDADIEAALQKAETASKEKSRASTVAINAEIRRTKARLLEEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPDRIQAIPDGTPAAPKQTGGWAASASRPEIKFDSDGRFDDEYFQQTEETSQFRQEYEMRKIKQDQGLDVIAEGLDTLKDMAHDMNEEMDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVNQLRSSRNFCIDIVLLIIILGIAAYLYNVLKK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00011 265 Pfam SNARE domain 207 256 IPR000727 -
Gabi4483g00011 265 FunFam Putative syntaxin-71-like 170 231 - -
Gabi4483g00011 265 PANTHER SYNTAXIN 45 252 IPR045242 -
Gabi4483g00011 265 CDD SNARE_Qc 175 230 - -
Gabi4483g00011 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Gabi4483g00011 265 SUPERFAMILY SNARE fusion complex 164 230 - -
Gabi4483g00011 265 Gene3D - 170 231 - -
Gabi4483g00011 265 Coils Coil 264 265 - -
Gabi4483g00011 265 SMART tSNARE_6 165 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00011 Gabi-Chr4483 32196 36221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00011 1 264 SNARE and Associated Proteins AT3G09740 78.571 1.74e-158 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00011 K08506 - gmx:100804155 465.692