Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4483g00003 ATGGGGCATCGACACTTGTATAGCACATCTCCATTTTTTGAGGGTGAGCCTGACCAGAATTGGAATCATATGCATACTGATCAACATTATGTGCACCTTGGTAGGACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGTGGAAAATATGCCTACAGATAGCATTTCTTTCCCCTCTCATTGGAACTCTGCCACAAGGTCAAATGGATACGCACCCTCAAATCCCAATATTGAAGTACCTCCTCATCAATCAGATGCATCAGGCACTTCTAATGATCATTTTATGCATTCGTCTAGTGCTGGTTCTTTCTTTGCAGTGTCTGAAAATTATTTGCACCAGCCCTCTTCTTCCAATTATGACAGACAAGCATTTCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAATGGACCAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTTCAAGCAGATACTATAATGCTGGAAGTTCAACTGATCTTCCTTTATCTTCAGAATTAAGGCAGGAGAAGCCAAATATAGATTCTCAATATATGCCCTGGGATCATGTTACTATGGCACCCGCATTCAGAGGTGCTGGCCTTTCAATAAAGGGTGAGGGTTCTTCAAGGAATGTGAGGAGTCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCAAGTAATCAATCACACAATTCCTACTGTGCTGTCCCACCAGTTGACCACCCTAGCGTGGTGGATCTTTCAGGTCAGACTTCTACCACTTTGACAAGGGATTGGAGCCAAATGAACATATCTCCTGCTAATGGAAGGGTGTTATTACCAGATACAAGTGCTTTTGGTCTTGAGACAAGTCACTTCCTTGTTGGAAGTGGTGCTTCTGCCAGTAATGCTTCTGTAGATGGTGGGGGCTTCCATCATGAATTTGGTACAAGTAGAAATCCTACTGCTCCTCAAAGTTTTAATAATAATCTGACTCAGACTGCTAGGGGAATTCGAAGTAACTATTCTCAGAGATCCACTCCAACTTTTAAGGCTTCTTCAAGCTTGCGCTTGGGACATATGATACCTTCAGATGATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCGATGACAACCGTTGGCTGGAGGAACAGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGGCTGTCGAGGCTGGCCTCCATGATCGATTTTCCTCTGAGGGCTTCATGATCGTTGAGCGTGCTTCACTGTATGGTTCTAGGAATGTGAATGATCAGCACAGAGATATGAGGATGGACATAGATAATATGAGCTATGAGGAACTACTTGCACTTGGCGAGAGGATTGGCCAGGTCAACACAGGATTGTCCGAGGATTTGCTTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGAGCAAAATCAAGACGAAGGAAGTTGTGTAGTTTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAAGCTTCTGCTTTGCCCGAGGATACGAAGGATAAATAA 1653 0.4289 MGHRHLYSTSPFFEGEPDQNWNHMHTDQHYVHLGRTSTSENGSFIYPVENMPTDSISFPSHWNSATRSNGYAPSNPNIEVPPHQSDASGTSNDHFMHSSSAGSFFAVSENYLHQPSSSNYDRQAFHVDGGFIDLTMGNGPGPHKRKSPGIPSVYERGSSSRYYNAGSSTDLPLSSELRQEKPNIDSQYMPWDHVTMAPAFRGAGLSIKGEGSSRNVRSRSALDLESNLARTHLSSNQSHNSYCAVPPVDHPSVVDLSGQTSTTLTRDWSQMNISPANGRVLLPDTSAFGLETSHFLVGSGASASNASVDGGGFHHEFGTSRNPTAPQSFNNNLTQTARGIRSNYSQRSTPTFKASSSLRLGHMIPSDDGLPMVAESYSSRHPRPMTTVGWRNSDRNGRSRISSERYRSLAVEAGLHDRFSSEGFMIVERASLYGSRNVNDQHRDMRMDIDNMSYEELLALGERIGQVNTGLSEDLLSKCLTETIYCSSEQNQDEGSCVVCLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDTKDK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4483g00003 550 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 543 IPR013083 -
Gabi4483g00003 550 CDD RING-H2_RNF24-like 497 542 - -
Gabi4483g00003 550 SUPERFAMILY RING/U-box 486 543 - -
Gabi4483g00003 550 SMART ring_2 497 538 IPR001841 -
Gabi4483g00003 550 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 142 543 IPR045191 GO:0061630
Gabi4483g00003 550 MobiDBLite consensus disorder prediction 139 158 - -
Gabi4483g00003 550 MobiDBLite consensus disorder prediction 378 397 - -
Gabi4483g00003 550 MobiDBLite consensus disorder prediction 380 396 - -
Gabi4483g00003 550 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 462 543 - -
Gabi4483g00003 550 ProSiteProfiles Zinc finger RING-type profile. 497 539 IPR001841 -
Gabi4483g00003 550 MobiDBLite consensus disorder prediction 67 94 - -
Gabi4483g00003 550 Pfam Ring finger domain 496 539 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4483g00003 Gabi-Chr4483 16869 25042 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4483g00003 1 549 C3H Transcription Factor Family AT2G37150 42.703 1.82e-120 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4483g00003 - - gmx:100803627 978.008