Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4477g00004 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGATGGGCGAGGACGACGAGTGCTCTTATGCTCGTAAGAAGAAGAAGACGAACGGGTACTACCCTCTGAACCTTCTCGGCGAAGTCGCCGCCGGAATAATACCGGGGAACTTTCATGGCCTTCTGAGTGCCGGCGTGTCGGAGAAGGGCTTATCTGCATCATGGTGCACCCAAGTACCGTGCTCCCCCGGCGAAGTTGAATCGAACTCGAAAAGCGACGCCATTCGAGCCAAGAAGAACCAGGTTCAACGGCCACCGCTGGTTCGGACGTCGAGGGGGCGAGTTCAGGTTCTCCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAGGAGAGCAAGACTAGCTTGCGTGATTATGATTGTGAAGACGAATTTGAATGCAAGAAGGACAAGTTCAGCTTCAGGGCACCCAAAATTTGCAATCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTATAAGCCTCGCAAGTACTCTGCATTGTGTGGGGATGAAGCAAGTGTGAGGTATAAGAGTTTTGTTGATTTGATGGGAAATGAGAGGGTTTTGAAGGAGAATGGGGAGAAGAAAGATGGATTGTATGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCCATTGTCATTGATCCTGTATCTCAAGCACCTGAGCTGGTTGTGAGGTCTTGGATAGCTGATGCAGCTTGTATCATGTTTCTTGGGTACGCCGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGAATATGTGGACAGGTTTCAGGGGCAGTCTGAATTGAAATACTATAATCCCTCTGACTTTCAAATGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGCTTCACTGAGAAGTTGATAGCAGATATAAATATAGCAGCTGGTTATGATGATACTATGCTGAAAGCTTTTCAGGAGGTAGATGGTTCAAACCAGTATGCAGGATACGACTTTCTGAACCAGGATTTACTTGATCAGAAGAAAGACACTCGACCCTGTGAAGCCTGTGGATTGGGCGTTCCTTACAAGATGTCAAAGAAAACGAAGAATTCAACTCCTGGTGGCCAATTCTTGTGCAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTACATGCAGAATGCGACAAAATTCCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCGAAAGTCAAGTGGAACAAAAACAATGGCCAAAACAGTGGGCAGCTAGTGCTTCCAAATAAGGTCACGGTTGTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCGCTGGAACAATGGATGCTGCAATTGGCAGAATTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAATCTTCTCTAAAGGAAAGGAAGCAGAAGTTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCCAAGTGGACTACAGAACGTTGTGCGGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGTAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAGGCTTGTGAAACTCCTAGTATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTGACGTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTATCTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACTCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAGAAAATCTGGATCAAGGTTAATCTCATCTAAGAGAATAAAGCAAGAACACACTCCTGTTGATAAGGCTGGCCATGAGCCATTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAATCATACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCATCAAGTGAGGGGTCACTGCCATCATTCTTTAGAAGCAATACAGAGTTTAAATGCATACAGAGTGATAGAGGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTTTTCCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGTGAACAAGTGAGACGCAGCATTGCGGATATGAGGGAGGCACGCTATAGATTACAAGGGAAAGACTGCTATCTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAACATCGCACGGCTAATTAATCACTCCTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGACGAGAGCCGGATTGTACTCATTGCTAAGACCAACGTATCTTCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAACCCGATGAATTCAAAGTTCCCTGCCTATGTAAAGCTCCAAACTGTCGGAAATTCATGAATTAG 3141 0.4374 MIIKRNLKSQMPSLKRCKLGDPMGEDDECSYARKKKKTNGYYPLNLLGEVAAGIIPGNFHGLLSAGVSEKGLSASWCTQVPCSPGEVESNSKSDAIRAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTSLRDYDCEDEFECKKDKFSFRAPKICNQNARKGRNDEKIGYKPRKYSALCGDEASVRYKSFVDLMGNERVLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPVSQAPELVVRSWIADAACIMFLGYAGNENQRDYAWVKHGMIFPFMEYVDRFQGQSELKYYNPSDFQMAIEEAFLADQGFTEKLIADINIAAGYDDTMLKAFQEVDGSNQYAGYDFLNQDLLDQKKDTRPCEACGLGVPYKMSKKTKNSTPGGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKIPSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQNSGQLVLPNKVTVVCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHANALVSVKPKKSSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPSIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKRKSGSRLISSKRIKQEHTPVDKAGHEPFSAARCRIFQRTNHTKKRAADEAISHQVRGHCHHSLEAIQSLNAYRVIEEPQAFSSFRERLFHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADMREARYRLQGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSSGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4477g00004 1046 PANTHER PHD FINGER PROTEINS 11 468 - -
Gabi4477g00004 1046 CDD SET_SETD1-like 891 1042 - -
Gabi4477g00004 1046 CDD PHD_ATX3_4_5_like 614 660 IPR042011 -
Gabi4477g00004 1046 SMART set_7 904 1027 IPR001214 GO:0005515
Gabi4477g00004 1046 FunFam Histone-lysine N-methyltransferase 664 783 - -
Gabi4477g00004 1046 ProSiteProfiles Zinc finger PHD-type profile. 414 470 IPR019787 -
Gabi4477g00004 1046 Pfam PHD-finger 416 469 IPR019787 -
Gabi4477g00004 1046 Pfam PHD-zinc-finger like domain 668 780 - -
Gabi4477g00004 1046 SUPERFAMILY FYVE/PHD zinc finger 613 677 IPR011011 -
Gabi4477g00004 1046 Gene3D SET domain 800 1046 IPR046341 -
Gabi4477g00004 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 664 783 IPR013083 -
Gabi4477g00004 1046 CDD ePHD_ATX3_4_5_like 669 780 IPR041955 -
Gabi4477g00004 1046 ProSiteProfiles Zinc finger PHD-type profile. 612 663 IPR019787 -
Gabi4477g00004 1046 ProSiteProfiles Post-SET domain profile. 1030 1046 IPR003616 -
Gabi4477g00004 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 410 472 IPR013083 -
Gabi4477g00004 1046 SMART PostSET_3 1030 1046 IPR003616 -
Gabi4477g00004 1046 Gene3D - 221 326 - -
Gabi4477g00004 1046 ProSiteProfiles PWWP domain profile. 226 295 IPR000313 -
Gabi4477g00004 1046 Pfam PWWP domain 227 320 IPR000313 -
Gabi4477g00004 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 663 IPR013083 -
Gabi4477g00004 1046 SUPERFAMILY Tudor/PWWP/MBT 219 323 - -
Gabi4477g00004 1046 SUPERFAMILY SET domain 898 1043 IPR046341 -
Gabi4477g00004 1046 CDD PWWP_AtATX3-like 225 329 - -
Gabi4477g00004 1046 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1046 IPR025780 -
Gabi4477g00004 1046 ProSiteProfiles Extended PHD (ePHD) domain profile. 666 781 IPR034732 -
Gabi4477g00004 1046 FunFam Histone-lysine N-methyltransferase 602 663 - -
Gabi4477g00004 1046 Pfam PHD-finger 627 661 - -
Gabi4477g00004 1046 SUPERFAMILY FYVE/PHD zinc finger 414 471 IPR011011 -
Gabi4477g00004 1046 CDD PHD_TCF19_like 417 467 - -
Gabi4477g00004 1046 ProSiteProfiles SET domain profile. 904 1021 IPR001214 GO:0005515
Gabi4477g00004 1046 SMART PHD_3 416 468 IPR001965 -
Gabi4477g00004 1046 SMART PHD_3 725 781 IPR001965 -
Gabi4477g00004 1046 SMART PHD_3 614 661 IPR001965 -
Gabi4477g00004 1046 ProSitePatterns Zinc finger PHD-type signature. 615 660 IPR019786 -
Gabi4477g00004 1046 Pfam SET domain 915 1020 IPR001214 GO:0005515
Gabi4477g00004 1046 FunFam Histone-lysine N-methyltransferase 878 1046 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4477g00004 Gabi-Chr4477 11727 22823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4477g00004 615 780 C2H2 Transcription Factor Family AT3G14740 34.483 9.61e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4477g00004 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4477g00004 - - aprc:113853254 1924.83