Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4477g00003 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGATGGGCGAGGACGACGAGTGCTCTTATGCTCGTAAGAAGAAGAAGACGAACGGGTACTACCCTCTGAACCTTCTCGGCGAAGTCGCCGCCGGAATAATACCGGGGAACTTTCATGGCCTTCTGAGTGCCGGCGTGTCGGAGAAGGGCTTATCTGCATCATGGTGCACCCAAGTACCGTGCTCCCCCGGCGAAGTTGAATCGAACTCGAAAAGCGACGCCATTCGAGCCAAGAAGAACCAGGTTCAACGGCCACCGCTGGTTCGGACGTCGAGGGGGCGAGTTCAGGTTCTCCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAGGAGAGCAAGACTAGCTTGCGTGATTATGATTGTGAAGACGAATTTGAATGCAAGAAGGACAAGTTCAGCTTCAGGGCACCCAAAATTTGCAATCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTATAAGCCTCGCAAGTACTCTGCATTGTGTGGGGATGAAGCAAGTGTGAGGTATAAGAGTTTTGGTACGAGCAAAGGAAGGTTTCTGGAGGTTGAAGGAGTTGATTTGATGGGAAATGAGAGGGTTTTGAAGGAGAATGGGGAGAAGAAAGATGGATTGTATGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCCATTGTCATTGATCCTGTATCTCAAGCACCTGAGCTGGTTGTGAGGTCTTGGATAGCTGATGCAGCTTGTATCATGTTTCTTGGGTACGCCGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGAATATGTGGACAGGTTTCAGGGGCAGTCTGAATTGAAATACTATAATCCCTCTGACTTTCAAATGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGCTTCACTGAGAAGTTGATAGCAGATATAAATATAGCAGCTGGTTATGATGATACTATGCTGAAAGCTTTTCAGGAGGTAGATGGTTCAAACCAGTATGCAGGATACGACTTTCTGAACCAGGATTTACTTGATCAGAAGAAAGACACTCGACCCTGTGAAGCCTGTGGATTGGGCGTTCCTTACAAGATGTCAAAGAAAACGAAGAATTCAACTCCTGGTGGCCAATTCTTGTGCAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTACATGCAGAATGCGACAAAATTCCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCGAAAGTCAAGTGGAACAAAAACAATGGCCAAAACAGTGGGCAGCTAGTGCTTCCAAATAAGGTCACGGTTGTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCGCTGGAACAATGGATGCTGCAATTGGCAGAATTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAATCTTCTCTAAAGGAAAGGAAGCAGAAGTTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCCAAGTGGACTACAGAACGTTGTGCGGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGTAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAGGCTTGTGAAACTCCTAGTATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTGACGTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTATCTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACTCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAGAAAATCTGGATCAAGGTTAATCTCATCTAAGAGAATAAAGCAAGAACACACTCCTGTTGATAAGGCTGGCCATGAGCCATTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAATCATACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCATCAAGTGAGGGGTCACTGCCATCATTCTTTAGAAGCAATACAGAGTTTAAATGCATACAGAGTGATAGAGGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTTTTCCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGTGAACAAGTGAGACGCAGCATTGCGGATATGAGGGAGGCACGCTATAGATTACAAGGGAAAGACTGCTATCTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAACATCGCACGGCTAATTAATCACTCCTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGACGAGAGCCGGATTGTACTCATTGCTAAGACCAACGTATCTTCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAACCCGATGAATTCAAAGTTCCCTGCCTATGTAAAGCTCCAAACTGTCGGAAATTCATGAATTAG 3177 0.4381 MIIKRNLKSQMPSLKRCKLGDPMGEDDECSYARKKKKTNGYYPLNLLGEVAAGIIPGNFHGLLSAGVSEKGLSASWCTQVPCSPGEVESNSKSDAIRAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTSLRDYDCEDEFECKKDKFSFRAPKICNQNARKGRNDEKIGYKPRKYSALCGDEASVRYKSFGTSKGRFLEVEGVDLMGNERVLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPVSQAPELVVRSWIADAACIMFLGYAGNENQRDYAWVKHGMIFPFMEYVDRFQGQSELKYYNPSDFQMAIEEAFLADQGFTEKLIADINIAAGYDDTMLKAFQEVDGSNQYAGYDFLNQDLLDQKKDTRPCEACGLGVPYKMSKKTKNSTPGGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKIPSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQNSGQLVLPNKVTVVCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHANALVSVKPKKSSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPSIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKRKSGSRLISSKRIKQEHTPVDKAGHEPFSAARCRIFQRTNHTKKRAADEAISHQVRGHCHHSLEAIQSLNAYRVIEEPQAFSSFRERLFHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADMREARYRLQGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSSGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4477g00003 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 676 795 IPR013083 -
Gabi4477g00003 1058 Pfam PWWP domain 239 332 IPR000313 -
Gabi4477g00003 1058 Gene3D SET domain 812 1058 IPR046341 -
Gabi4477g00003 1058 CDD PWWP_AtATX3-like 237 341 - -
Gabi4477g00003 1058 Pfam PHD-finger 428 481 IPR019787 -
Gabi4477g00003 1058 ProSitePatterns Zinc finger PHD-type signature. 627 672 IPR019786 -
Gabi4477g00003 1058 CDD PHD_TCF19_like 429 479 - -
Gabi4477g00003 1058 ProSiteProfiles PWWP domain profile. 238 307 IPR000313 -
Gabi4477g00003 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 484 IPR013083 -
Gabi4477g00003 1058 Pfam PHD-zinc-finger like domain 680 792 - -
Gabi4477g00003 1058 SMART PHD_3 428 480 IPR001965 -
Gabi4477g00003 1058 SMART PHD_3 737 793 IPR001965 -
Gabi4477g00003 1058 SMART PHD_3 626 673 IPR001965 -
Gabi4477g00003 1058 ProSiteProfiles Post-SET domain profile. 1042 1058 IPR003616 -
Gabi4477g00003 1058 FunFam Histone-lysine N-methyltransferase 890 1058 - -
Gabi4477g00003 1058 SUPERFAMILY FYVE/PHD zinc finger 426 483 IPR011011 -
Gabi4477g00003 1058 Pfam PHD-finger 639 673 - -
Gabi4477g00003 1058 CDD SET_SETD1-like 903 1054 - -
Gabi4477g00003 1058 ProSiteProfiles Extended PHD (ePHD) domain profile. 678 793 IPR034732 -
Gabi4477g00003 1058 SMART set_7 916 1039 IPR001214 GO:0005515
Gabi4477g00003 1058 CDD PHD_ATX3_4_5_like 626 672 IPR042011 -
Gabi4477g00003 1058 SUPERFAMILY SET domain 910 1055 IPR046341 -
Gabi4477g00003 1058 SUPERFAMILY FYVE/PHD zinc finger 625 689 IPR011011 -
Gabi4477g00003 1058 ProSiteProfiles Zinc finger PHD-type profile. 624 675 IPR019787 -
Gabi4477g00003 1058 SUPERFAMILY Tudor/PWWP/MBT 231 335 - -
Gabi4477g00003 1058 ProSiteProfiles Zinc finger PHD-type profile. 426 482 IPR019787 -
Gabi4477g00003 1058 PANTHER PHD FINGER PROTEINS 11 482 - -
Gabi4477g00003 1058 FunFam Histone-lysine N-methyltransferase 676 795 - -
Gabi4477g00003 1058 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1058 IPR025780 -
Gabi4477g00003 1058 CDD ePHD_ATX3_4_5_like 681 792 IPR041955 -
Gabi4477g00003 1058 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 675 IPR013083 -
Gabi4477g00003 1058 SMART PostSET_3 1042 1058 IPR003616 -
Gabi4477g00003 1058 Pfam SET domain 927 1032 IPR001214 GO:0005515
Gabi4477g00003 1058 Gene3D - 233 338 - -
Gabi4477g00003 1058 FunFam Histone-lysine N-methyltransferase 614 675 - -
Gabi4477g00003 1058 ProSiteProfiles SET domain profile. 916 1033 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4477g00003 Gabi-Chr4477 11727 22823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4477g00003 627 792 C2H2 Transcription Factor Family AT3G14740 34.483 8.41e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4477g00003 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4477g00003 - - aprc:113853254 1944.86