Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4477g00002 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGATGGGCGAGGACGACGAGTGCTCTTATGCTCGTAAGAAGAAGAAGACGAACGGGTACTACCCTCTGAACCTTCTCGGCGAAGTCGCCGCCGGAATAATACCGGGGAACTTTCATGGCCTTCTGAGTGCCGGCGTGTCGGAGAAGGGCTTATCTGCATCATGGTGCACCCAAGTACCGTGCTCCCCCGGCGAAGTTGAATCGAACTCGAAAAGCGACGCCATTCGAGCCAAGAAGAACCAGGTTCAACGGCCACCGCTGGTTCGGACGTCGAGGGGGCGAGTTCAGGTTCTCCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAGGAGAGCAAGACTAGCTTGCGTGATTATGATTGTGAAGACGAATTTGAATGCAAGAAGGACAAGTTCAGCTTCAGGGCACCCAAAATTTGCAATCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTATAAGCCTCGCAAGTACTCTGCATTGTGTGGGGATGAAGCAAGTGTGAGGTATAAGAGTTTTGGTACGAGCAAGTATTCAACTTCGCGTGGTGGTGCATTGGCCTCAAGGCTTGAGGTGTTGGTTGAAGATGAGAGAGGAAGGTTTCTGGAGGTTGAAGGAGTTGATTTGATGGGAAATGAGAGGGTTTTGAAGGAGAATGGGGAGAAGAAAGATGGATTGTATGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCCATTGTCATTGATCCTGTATCTCAAGCACCTGAGCTGGTTGTGAGGTCTTGGATAGCTGATGCAGCTTGTATCATGTTTCTTGGGTACGCCGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGAATATGTGGACAGGTTTCAGGGGCAGTCTGAATTGAAATACTATAATCCCTCTGACTTTCAAATGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGCTTCACTGAGAAGTTGATAGCAGATATAAATATAGCAGCTGGTTATGATGATACTATGCTGAAAGCTTTTCAGGAGGTAGATGGTTCAAACCAGTATGCAGGATACGACTTTCTGAACCAGGATTTACTTGATCAGAAGAAAGACACTCGACCCTGTGAAGCCTGTGGATTGGGCGTTCCTTACAAGATGTCAAAGAAAACGAAGAATTCAACTCCTGGTGGCCAATTCTTGTGCAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTACATGCAGAATGCGACAAAATTCCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGTGGAACAAAAACAATGGCCAAAACAGTGGGCAGCTAGTGCTTCCAAATAAGGTCACGGTTGTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCGCTGGAACAATGGATGCTGCAATTGGCAGAATTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAATCTTCTCTAAAGGAAAGGAAGCAGAAGTTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCCAAGTGGACTACAGAACGTTGTGCGGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGTAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAGGCTTGTGAAACTCCTAGTATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTGACGTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTATCTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACTCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAGAAAATCTGGATCAAGGTTAATCTCATCTAAGAGAATAAAGCAAGAACACACTCCTGTTGATAAGGCTGGCCATGAGCCATTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAATCATACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCATCAAGTGAGGGGTCACTGCCATCATTCTTTAGAAGCAATACAGAGTTTAAATGCATACAGAGTGATAGAGGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTTTTCCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGTGAACAAGTGAGACGCAGCATTGCGGATATGAGGGAGGCACGCTATAGATTACAAGGGAAAGACTGCTATCTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAACATCGCACGGCTAATTAATCACTCCTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGACGAGAGCCGGATTGTACTCATTGCTAAGACCAACGTATCTTCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAACCCGATGAATTCAAAGTTCCCTGCCTATGTAAAGCTCCAAACTGTCGGAAATTCATGAATTAG 3228 0.4393 MIIKRNLKSQMPSLKRCKLGDPMGEDDECSYARKKKKTNGYYPLNLLGEVAAGIIPGNFHGLLSAGVSEKGLSASWCTQVPCSPGEVESNSKSDAIRAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTSLRDYDCEDEFECKKDKFSFRAPKICNQNARKGRNDEKIGYKPRKYSALCGDEASVRYKSFGTSKYSTSRGGALASRLEVLVEDERGRFLEVEGVDLMGNERVLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPVSQAPELVVRSWIADAACIMFLGYAGNENQRDYAWVKHGMIFPFMEYVDRFQGQSELKYYNPSDFQMAIEEAFLADQGFTEKLIADINIAAGYDDTMLKAFQEVDGSNQYAGYDFLNQDLLDQKKDTRPCEACGLGVPYKMSKKTKNSTPGGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKIPSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQWNKNNGQNSGQLVLPNKVTVVCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHANALVSVKPKKSSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPSIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKRKSGSRLISSKRIKQEHTPVDKAGHEPFSAARCRIFQRTNHTKKRAADEAISHQVRGHCHHSLEAIQSLNAYRVIEEPQAFSSFRERLFHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADMREARYRLQGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSSGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4477g00002 1075 CDD PWWP_AtATX3-like 258 362 - -
Gabi4477g00002 1075 Gene3D - 254 359 - -
Gabi4477g00002 1075 FunFam Histone-lysine N-methyltransferase 631 692 - -
Gabi4477g00002 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 693 812 IPR013083 -
Gabi4477g00002 1075 ProSiteProfiles Zinc finger PHD-type profile. 447 503 IPR019787 -
Gabi4477g00002 1075 ProSiteProfiles SET domain profile. 933 1050 IPR001214 GO:0005515
Gabi4477g00002 1075 SMART PostSET_3 1059 1075 IPR003616 -
Gabi4477g00002 1075 CDD ePHD_ATX3_4_5_like 698 809 IPR041955 -
Gabi4477g00002 1075 CDD PHD_ATX3_4_5_like 643 689 IPR042011 -
Gabi4477g00002 1075 ProSiteProfiles Zinc finger PHD-type profile. 641 692 IPR019787 -
Gabi4477g00002 1075 Pfam PHD-finger 449 502 IPR019787 -
Gabi4477g00002 1075 Pfam PHD-finger 656 690 - -
Gabi4477g00002 1075 Pfam SET domain 944 1049 IPR001214 GO:0005515
Gabi4477g00002 1075 ProSiteProfiles PWWP domain profile. 259 328 IPR000313 -
Gabi4477g00002 1075 SMART set_7 933 1056 IPR001214 GO:0005515
Gabi4477g00002 1075 SMART PHD_3 643 690 IPR001965 -
Gabi4477g00002 1075 SMART PHD_3 449 501 IPR001965 -
Gabi4477g00002 1075 SMART PHD_3 754 810 IPR001965 -
Gabi4477g00002 1075 SUPERFAMILY Tudor/PWWP/MBT 252 356 - -
Gabi4477g00002 1075 Gene3D SET domain 829 1075 IPR046341 -
Gabi4477g00002 1075 FunFam Histone-lysine N-methyltransferase 907 1075 - -
Gabi4477g00002 1075 SUPERFAMILY FYVE/PHD zinc finger 447 504 IPR011011 -
Gabi4477g00002 1075 SUPERFAMILY SET domain 927 1072 IPR046341 -
Gabi4477g00002 1075 PANTHER PHD FINGER PROTEINS 11 501 - -
Gabi4477g00002 1075 FunFam Histone-lysine N-methyltransferase 693 812 - -
Gabi4477g00002 1075 CDD PHD_TCF19_like 450 500 - -
Gabi4477g00002 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 692 IPR013083 -
Gabi4477g00002 1075 ProSitePatterns Zinc finger PHD-type signature. 644 689 IPR019786 -
Gabi4477g00002 1075 ProSiteProfiles Extended PHD (ePHD) domain profile. 695 810 IPR034732 -
Gabi4477g00002 1075 ProSiteProfiles Post-SET domain profile. 1059 1075 IPR003616 -
Gabi4477g00002 1075 Pfam PWWP domain 260 353 IPR000313 -
Gabi4477g00002 1075 SUPERFAMILY FYVE/PHD zinc finger 642 706 IPR011011 -
Gabi4477g00002 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 505 IPR013083 -
Gabi4477g00002 1075 CDD SET_SETD1-like 920 1071 - -
Gabi4477g00002 1075 Pfam PHD-zinc-finger like domain 697 809 - -
Gabi4477g00002 1075 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1075 IPR025780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4477g00002 Gabi-Chr4477 11727 22823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4477g00002 644 809 C2H2 Transcription Factor Family AT3G14740 34.483 9.68e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4477g00002 zf-HC5HC2H_2 2.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4477g00002 - - aprc:113853254 1964.5