Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4477g00001 ATGATTATCAAGCGGAACCTGAAATCCCAAATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGATGGGCGAGGACGACGAGTGCTCTTATGCTCGTAAGAAGAAGAAGACGAACGGGTACTACCCTCTGAACCTTCTCGGCGAAGTCGCCGCCGGAATAATACCGGGGAACTTTCATGGCCTTCTGAGTGCCGGCGTGTCGGAGAAGGGCTTATCTGCATCATGGTGCACCCAAGTACCGTGCTCCCCCGGCGAAGTTGAATCGAACTCGAAAAGCGACGCCATTCGAGCCAAGAAGAACCAGGTTCAACGGCCACCGCTGGTTCGGACGTCGAGGGGGCGAGTTCAGGTTCTCCCTTCGCGGTTCAACGACTCTGTTATTGATAATTGGAGGAAGGAGAGCAAGACTAGCTTGCGTGATTATGATTGTGAAGACGAATTTGAATGCAAGAAGGACAAGTTCAGCTTCAGGGCACCCAAAATTTGCAATCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTATAAGCCTCGCAAGTACTCTGCATTGTGTGGGGATGAAGCAAGTGTGAGGTATAAGAGTTTTGGTACGAGCAAGTATTCAACTTCGCGTGGTGGTGCATTGGCCTCAAGGCTTGAGGTGTTGGTTGAAGATGAGAGAGGAAGGTTTCTGGAGGTTGAAGGAGTTGATTTGATGGGAAATGAGAGGGTTTTGAAGGAGAATGGGGAGAAGAAAGATGGATTGTATGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCCATTGTCATTGATCCTGTATCTCAAGCACCTGAGCTGGTTGTGAGGTCTTGGATAGCTGATGCAGCTTGTATCATGTTTCTTGGGTACGCCGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGAATATGTGGACAGGTTTCAGGGGCAGTCTGAATTGAAATACTATAATCCCTCTGACTTTCAAATGGCAATAGAGGAGGCATTTTTGGCAGATCAGGGCTTCACTGAGAAGTTGATAGCAGATATAAATATAGCAGCTGGTTATGATGATACTATGCTGAAAGCTTTTCAGGAGGTAGATGGTTCAAACCAGTATGCAGGATACGACTTTCTGAACCAGGATTTACTTGATCAGAAGAAAGACACTCGACCCTGTGAAGCCTGTGGATTGGGCGTTCCTTACAAGATGTCAAAGAAAACGAAGAATTCAACTCCTGGTGGCCAATTCTTGTGCAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTACATGCAGAATGCGACAAAATTCCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCGAAAGTCAAGTGGAACAAAAACAATGGCCAAAACAGTGGGCAGCTAGTGCTTCCAAATAAGGTCACGGTTGTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCACTTAGTGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTACCGCTGGAACAATGGATGCTGCAATTGGCAGAATTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAATCTTCTCTAAAGGAAAGGAAGCAGAAGTTGCTTACCTTCTTGCAAGAGAAGTATGAACCTGTTTATGCCAAGTGGACTACAGAACGTTGTGCGGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGTAACAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAGGCTTGTGAAACTCCTAGTATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTGACGTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTATCTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCATGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGAATGGAGTTGCATTGTTTGGAGAAAAATGGTAGGCAGACAACAAAAATGGTTTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAAACTCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAGAAAATCTGGATCAAGGTTAATCTCATCTAAGAGAATAAAGCAAGAACACACTCCTGTTGATAAGGCTGGCCATGAGCCATTTTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAATCATACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCATCAAGTGAGGGGTCACTGCCATCATTCTTTAGAAGCAATACAGAGTTTAAATGCATACAGAGTGATAGAGGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTTTTCCACTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTAGAAACATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGTGAACAAGTGAGACGCAGCATTGCGGATATGAGGGAGGCACGCTATAGATTACAAGGGAAAGACTGCTATCTGTTTAAGATTAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAACATCGCACGGCTAATTAATCACTCCTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGACGAGAGCCGGATTGTACTCATTGCTAAGACCAACGTATCTTCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAACCCGATGAATTCAAAGTTCCCTGCCTATGTAAAGCTCCAAACTGTCGGAAATTCATGAATTAG 3240 0.4395 MIIKRNLKSQMPSLKRCKLGDPMGEDDECSYARKKKKTNGYYPLNLLGEVAAGIIPGNFHGLLSAGVSEKGLSASWCTQVPCSPGEVESNSKSDAIRAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTSLRDYDCEDEFECKKDKFSFRAPKICNQNARKGRNDEKIGYKPRKYSALCGDEASVRYKSFGTSKYSTSRGGALASRLEVLVEDERGRFLEVEGVDLMGNERVLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPVSQAPELVVRSWIADAACIMFLGYAGNENQRDYAWVKHGMIFPFMEYVDRFQGQSELKYYNPSDFQMAIEEAFLADQGFTEKLIADINIAAGYDDTMLKAFQEVDGSNQYAGYDFLNQDLLDQKKDTRPCEACGLGVPYKMSKKTKNSTPGGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKIPSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQNSGQLVLPNKVTVVCNGVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHANALVSVKPKKSSLKERKQKLLTFLQEKYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPSIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKRKSGSRLISSKRIKQEHTPVDKAGHEPFSAARCRIFQRTNHTKKRAADEAISHQVRGHCHHSLEAIQSLNAYRVIEEPQAFSSFRERLFHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADMREARYRLQGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSSGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4477g00001 1079 CDD PWWP_AtATX3-like 258 362 - -
Gabi4477g00001 1079 Gene3D - 254 359 - -
Gabi4477g00001 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 696 IPR013083 -
Gabi4477g00001 1079 ProSiteProfiles Zinc finger PHD-type profile. 447 503 IPR019787 -
Gabi4477g00001 1079 ProSiteProfiles Zinc finger PHD-type profile. 645 696 IPR019787 -
Gabi4477g00001 1079 ProSiteProfiles Extended PHD (ePHD) domain profile. 699 814 IPR034732 -
Gabi4477g00001 1079 SMART set_7 937 1060 IPR001214 GO:0005515
Gabi4477g00001 1079 PANTHER PHD FINGER PROTEINS 11 501 - -
Gabi4477g00001 1079 Pfam PHD-finger 449 502 IPR019787 -
Gabi4477g00001 1079 SUPERFAMILY FYVE/PHD zinc finger 447 504 IPR011011 -
Gabi4477g00001 1079 Gene3D SET domain 833 1079 IPR046341 -
Gabi4477g00001 1079 ProSiteProfiles PWWP domain profile. 259 328 IPR000313 -
Gabi4477g00001 1079 CDD SET_SETD1-like 924 1075 - -
Gabi4477g00001 1079 ProSiteProfiles Post-SET domain profile. 1063 1079 IPR003616 -
Gabi4477g00001 1079 FunFam Histone-lysine N-methyltransferase 635 696 - -
Gabi4477g00001 1079 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1079 IPR025780 -
Gabi4477g00001 1079 Pfam PHD-finger 660 694 - -
Gabi4477g00001 1079 Pfam PHD-zinc-finger like domain 701 813 - -
Gabi4477g00001 1079 SUPERFAMILY Tudor/PWWP/MBT 252 356 - -
Gabi4477g00001 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 697 816 IPR013083 -
Gabi4477g00001 1079 SMART PHD_3 758 814 IPR001965 -
Gabi4477g00001 1079 SMART PHD_3 449 501 IPR001965 -
Gabi4477g00001 1079 SMART PHD_3 647 694 IPR001965 -
Gabi4477g00001 1079 Pfam SET domain 948 1053 IPR001214 GO:0005515
Gabi4477g00001 1079 FunFam Histone-lysine N-methyltransferase 911 1079 - -
Gabi4477g00001 1079 CDD PHD_ATX3_4_5_like 647 693 IPR042011 -
Gabi4477g00001 1079 CDD ePHD_ATX3_4_5_like 702 813 IPR041955 -
Gabi4477g00001 1079 CDD PHD_TCF19_like 450 500 - -
Gabi4477g00001 1079 SUPERFAMILY FYVE/PHD zinc finger 646 710 IPR011011 -
Gabi4477g00001 1079 SMART PostSET_3 1063 1079 IPR003616 -
Gabi4477g00001 1079 SUPERFAMILY SET domain 931 1076 IPR046341 -
Gabi4477g00001 1079 Pfam PWWP domain 260 353 IPR000313 -
Gabi4477g00001 1079 FunFam Histone-lysine N-methyltransferase 697 816 - -
Gabi4477g00001 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 505 IPR013083 -
Gabi4477g00001 1079 ProSiteProfiles SET domain profile. 937 1054 IPR001214 GO:0005515
Gabi4477g00001 1079 ProSitePatterns Zinc finger PHD-type signature. 648 693 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4477g00001 Gabi-Chr4477 11727 22823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4477g00001 648 813 C2H2 Transcription Factor Family AT3G14740 34.483 9.82e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4477g00001 zf-HC5HC2H_2 2.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4477g00001 - - aprc:113853254 1975.29