Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00072 ATGATGATTTTTTTCCCCAAAGACATGACTTCCCCATCCTCAATTTTCAAGGCTTATGCCTCCATGAGTGCCTCTATCATGCTTCTGCGTTCCATGTTCAACGAGTTCGTACCTCAACCAGTTCGTGGCCATCTTTCCAATGCCTTCCGCTACCTCATCAAGCCTCGCTCCCCTACTCTCACACTCGTCATTGAAGAGTCCAGTGGCATAGCTCGCAACCAAGTCTATGATGCTGCAGAGGCTTACCTCTCCACCAAAGTGAGCCCTGCTAATGAAAGGCTCAGGATAAGCAAGAGTCCAAAGGAGAAGAATTTGACCATTCGGTTAGAGAGTGGTGAAAAACTAACTGATTCCTATGAAGGGGTTTCTCTCAAATGGAGATTCAACTGCGCAGAATCAGAGAAGAACAACTCCCCCGACGATTATGGTAGTATCTCTATAAGGTCGGTAAAGCGATATTTTGAGCTGAGCTTCAACAAGAAGCACAAGGAAATGGTCTTGGAATCTTACCTGCCCTTCATTCTAGAGAAAGCAAAGGAGATGAGAGATGAGGAAAGGGTGTTGAAGATTCATACTTTGAATACCTCCAATTATGGTTATAGTGGGGTCAAATGGGACTCCGTAAACCTCGAGCACCCATCGACTTTTGAGACACTGGCTATGGAGTCAGAGCTGAAGAATGCAGTCATTGAGGATCTAAATAGGTTTGTGAAGAGAAGGGACTTTTACAAGAAAGTTGGGAGGGCATGGAAACGTGGGTACTTATTGTATGGCCCTCCGGGTACTGGCAAATCCAGCTTGATCGCTGCCATGGCTAATCACTTGAAGTTTGATATCTTTGACTTGCAACTTGGCAACATAAGAAAGGATTCGGACCTGAGAAAGTTGCTTCTGGCTACAGCAAATAGGTCCATTTTAGTCATTGAAGACATTGATTGCAGTGTGGATCTTCCAGAGCGTAGGCATGGGGATGGACGTGAACAAGCTGATGGACAGGATAAAGCAATTGATGGATGGAAGCAGTTGACTTTGTCTGGATTACTGAACTTCATAGATGGGTTATGGTCTAGTTGTGGAGAGGAGAGAATCATCGTATTCACCACAAACCACAAGGAAAGACTAGACCCAGCTCTGTTGAGGCCTGGAAGAATGGACATGCACATTCACATGTCCTATTGCACCTACCAAGGGTTCAAGCTTTTGGCCTCAAATTACTTGGAAATTTCCTCTGACCACCGCCTGTTTGGGGAGATTGAGGGGCTAATAGAGGAGACACGGATAACCCCTGCGCAAGTGGCAGAGGAATTGATGAAGAGCGAAGATGCTGAGGAGTCACTTGAAGGATTCATGAAGCTACTTAAGCGGAAGAAGATGGAAGGTGATGTATTTGAGAGCTATAGTCAAGATAAAGCAGAAACTCATCAGCAATCCAAAAGGCGTAAGGCTGCAGCAAAAACAAGCTGTTGGGATCAACAAGAGAAATAG 1485 0.4525 MMIFFPKDMTSPSSIFKAYASMSASIMLLRSMFNEFVPQPVRGHLSNAFRYLIKPRSPTLTLVIEESSGIARNQVYDAAEAYLSTKVSPANERLRISKSPKEKNLTIRLESGEKLTDSYEGVSLKWRFNCAESEKNNSPDDYGSISIRSVKRYFELSFNKKHKEMVLESYLPFILEKAKEMRDEERVLKIHTLNTSNYGYSGVKWDSVNLEHPSTFETLAMESELKNAVIEDLNRFVKRRDFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANHLKFDIFDLQLGNIRKDSDLRKLLLATANRSILVIEDIDCSVDLPERRHGDGREQADGQDKAIDGWKQLTLSGLLNFIDGLWSSCGEERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCTYQGFKLLASNYLEISSDHRLFGEIEGLIEETRITPAQVAEELMKSEDAEESLEGFMKLLKRKKMEGDVFESYSQDKAETHQQSKRRKAAAKTSCWDQQEK 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00072 494 Pfam Domain associated at C-terminal with AAA 37 129 IPR025753 -
Gabi4472g00072 494 CDD RecA-like_BCS1 229 390 - -
Gabi4472g00072 494 SMART AAA_5 250 394 IPR003593 GO:0016887
Gabi4472g00072 494 PANTHER BCS1 AAA-TYPE ATPASE 17 458 - -
Gabi4472g00072 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 441 IPR027417 -
Gabi4472g00072 494 FunFam AAA-ATPase ASD, mitochondrial 206 388 - -
Gabi4472g00072 494 Gene3D - 389 463 - -
Gabi4472g00072 494 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Gabi4472g00072 494 Pfam ATPase family associated with various cellular activities (AAA) 255 391 IPR003959 GO:0005524|GO:0016887
Gabi4472g00072 494 Gene3D - 203 388 IPR027417 -
Gabi4472g00072 494 MobiDBLite consensus disorder prediction 464 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00072 Gabi-Chr4472 787826 790091 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00072 148 390 Calmodulin-binding Proteins AT3G56690 25.591 3.34e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00072 - - gmx:100789621 764.607