Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00051 ATGGGTCGTGGGAAGATTGAGATAAAATTGATTGAGAACCCCACGAACAGGCAGGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTTACGACAAAGAAGGTAATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCTCATCATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACAATAAACTCAGAAGACAGATCAGGCATAGGATAGGTGAGGGTTTCGATATGGACGATATGAGCTTCCAGCAACTGCGTAGTCTTGAAGAAGATATGGTGTCTTCTATTGGGAAAATACGCGAACGAAAGTTCCATGTGATCAAAACTCGTACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAACGGAAATCTCCTGCTTGAACTTGAGACGAATTGGCCAACGGTGCCTCCAACCTGTATGCATTCTGTCAGCACCATACTCATCTAA 576 0.4253 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKVIDQYQKTLGDIDLWRSHHEKMLENLKKLKDINNKLRRQIRHRIGEGFDMDDMSFQQLRSLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELETNWPTVPPTCMHSVSTILI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00051 191 Coils Coil 85 105 - -
Gabi4472g00051 191 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4472g00051 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 155 - -
Gabi4472g00051 191 Gene3D - 14 103 IPR036879 GO:0003677|GO:0046983
Gabi4472g00051 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Gabi4472g00051 191 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4472g00051 191 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4472g00051 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4472g00051 191 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gabi4472g00051 191 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi4472g00051 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4472g00051 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4472g00051 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4472g00051 191 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00051 Gabi-Chr4472 532498 534353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00051 1 172 MADS-box Gene Family AT3G54340 54.070 3.77e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4472g00051 K-box 1.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00051 K09264 - gmx:100784496 325.479