Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00050 ATGGGTCGTGGGAAGATTGAGATAAAATTGATTGAGAACCCCACGAACAGGCAGGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTTACGACAAAGAAGGTAATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCTCATCATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACAATAAACTCAGAAGACAGATCAGGCATAGGATAGGTGAGGGTTTCGATATGGACGATATGAGCTTCCAGCAACTGCGTAGTCTTGAAGAAGATATGGTGTCTTCTATTGGGAAAATACGCGAACGAAAGTTCCATGTGATCAAAACTCGTACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAACGGAAATCTCCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAATTGGCCAACGGTGCCTCCAACCTGTATGCATTCTGTCAGCACCATACTCATCTAAATCTTCCCCACCATGGAGAAGGGTTTAAAATTGATGATCTGCGCCTGGCTTGA 675 0.4267 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKVIDQYQKTLGDIDLWRSHHEKMLENLKKLKDINNKLRRQIRHRIGEGFDMDDMSFQQLRSLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFLLHDEGDELANGASNLYAFCQHHTHLNLPHHGEGFKIDDLRLA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00050 224 Coils Coil 85 105 - -
Gabi4472g00050 224 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Gabi4472g00050 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4472g00050 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4472g00050 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4472g00050 224 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Gabi4472g00050 224 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4472g00050 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Gabi4472g00050 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4472g00050 224 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4472g00050 224 Gene3D - 14 102 IPR036879 GO:0003677|GO:0046983
Gabi4472g00050 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4472g00050 224 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gabi4472g00050 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00050 Gabi-Chr4472 532497 534353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00050 1 213 MADS-box Gene Family AT3G54340 47.964 8.98e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4472g00050 K-box 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00050 K09264 - gmx:100784496 396.741