Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00049 ATGGGTCGTGGGAAGATTGAGATAAAATTGATTGAGAACCCCACGAACAGGCAGGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTTTGTGATGCTAAGGTTTCACTCATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTTACGACAAAGAAGGTAATTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCTCATCATGAGAAAATGCTTGAAAACTTGAAGAAACTGAAAGATATTAACAATAAACTCAGAAGACAGATCAGGCATAGGATAGGTGAGGGTTTCGATATGGACGATATGAGCTTCCAGCAACTGCGTAGTCTTGAAGAAGATATGGTGTCTTCTATTGGGAAAATACGCGAACGAAAGTTCCATGTGATCAAAACTCGTACTGATACCTGTAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAACGGAAATCTCCTGCTTGAACTTGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAATTGGCCAACGGTGCCTCCAACCTGTATGCATTCTGTCAGCACCATACTCATCTAAATCTTCCCCACCATGGAGAAGGGTTTAAAATTGATGATCTGCGCCTGGCTTGA 672 0.4271 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKVIDQYQKTLGDIDLWRSHHEKMLENLKKLKDINNKLRRQIRHRIGEGFDMDDMSFQQLRSLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLLHDEGDELANGASNLYAFCQHHTHLNLPHHGEGFKIDDLRLA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00049 223 Coils Coil 85 105 - -
Gabi4472g00049 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Gabi4472g00049 223 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi4472g00049 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi4472g00049 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi4472g00049 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi4472g00049 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi4472g00049 223 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Gabi4472g00049 223 Gene3D - 14 102 IPR036879 GO:0003677|GO:0046983
Gabi4472g00049 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi4472g00049 223 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Gabi4472g00049 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi4472g00049 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 161 - -
Gabi4472g00049 223 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00049 Gabi-Chr4472 532497 534353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00049 1 212 MADS-box Gene Family AT3G54340 48.636 1.84e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi4472g00049 K-box 2.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00049 K09264 - gmx:100784496 390.193