Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00047 ATGCTTTACCAAACTCCCTATCCTCTCCTCTTTCAATTTCATCCCTTGCCTTCTTCTACCCTTCCTCTTGCAACCACATCACCCATCTCTTCTGTTCCTCTGTTTTCTTATCTTCCTCAGGCTGAAACAGAAATGGAGTGTGTGGAGGCAGCAGCGTTGAAGACCAGTTTTAGGAAAGACTTAACCGCCGTGAAATTCAGCCCCCAAACCTTCATGGAAGAGCTGTCAGCGCTTAATGTGCCTAATGCCGCCTCCTGCGACGACTTTTCCGTTGACGACCTGCTTGATTTCTCGCACGTGGTGGAAGATGAGGAGAAAGAAGAACAACAACAGCACAAGGAGGAAGAAGACACTGCTTGTGTCTCTATTCAACAAGCGAACCAAAGCCATCAAATTTGTAACCACGGCACCAGTTACTCTGTCAAAGATGATTATAACTCTCTGCCCACTAGCGAGCTCAGCGTTCCGGCGGAAGATGCGGCGGACTTAGAGTGGCTGTCTCATTTCGTGGAGGATTCCTTTTCGGAATTCTCTGCTGTCTTCACCACCGTAACATTAACGGAGAAACCGAAGTGCCTTGTGGCGAAAGAGCCTGAACCGGGAAGCAATGTTCCTAACCAGCCATGTTTCAAAACTCCGGTTCAGACCAAAGCTAGAAGCAAGCGAACCAGAACCGGTGTTCGGGTTTGGCCACTCGGGTCACCTCTTTTCACCGAGTCCTCCTCGAGCTCCACTACAACATCTTCTTCTTCCTCCTCTTCGTCCCCCTCGAGCCCTTTACTAATTTACACCAACTTAGCCCAAAGCCTCGAGCAGGTTTGCTCCGAGGTAAGGCCGTCGGCGAAGAAACCGAAGAAAAGGGCCTCTTCAGACGGTGCGGCCGCCCAGACGCCACGACGGTGCAGCCATTGCGGCGTACAGAAGACCCCTCAGTGGAGAACTGGACCGCTCGGAGCGAAAACGCTTTGCAACGCATGTGGGGTCCGATATAAGTCGGGTCGGCTCTTACCCGAATACAGGCCAGCTTGTAGCCCCACGTTCTCCAGCGAATTGCACTCGAACCACCACCGTAAAGTGTTGGAGATGCGGCGGAAGAGGGAGATAGTGGGTGGAGTTGAAACCGATGTGGCCCCTGCTGCGATTGTTCCCAGTTTTTGA 1158 0.5207 MLYQTPYPLLFQFHPLPSSTLPLATTSPISSVPLFSYLPQAETEMECVEAAALKTSFRKDLTAVKFSPQTFMEELSALNVPNAASCDDFSVDDLLDFSHVVEDEEKEEQQQHKEEEDTACVSIQQANQSHQICNHGTSYSVKDDYNSLPTSELSVPAEDAADLEWLSHFVEDSFSEFSAVFTTVTLTEKPKCLVAKEPEPGSNVPNQPCFKTPVQTKARSKRTRTGVRVWPLGSPLFTESSSSSTTTSSSSSSSSPSSPLLIYTNLAQSLEQVCSEVRPSAKKPKKRASSDGAAAQTPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKREIVGGVETDVAPAAIVPSF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00047 385 MobiDBLite consensus disorder prediction 197 225 - -
Gabi4472g00047 385 SMART GATA_3 295 349 IPR000679 GO:0006355|GO:0043565
Gabi4472g00047 385 Pfam GATA zinc finger 301 335 IPR000679 GO:0006355|GO:0043565
Gabi4472g00047 385 FunFam GATA transcription factor 290 376 - -
Gabi4472g00047 385 Gene3D - 292 367 IPR013088 GO:0006355|GO:0008270
Gabi4472g00047 385 PANTHER GATA TRANSCRIPTION FACTOR 76 367 - -
Gabi4472g00047 385 MobiDBLite consensus disorder prediction 274 308 - -
Gabi4472g00047 385 MobiDBLite consensus disorder prediction 237 258 - -
Gabi4472g00047 385 CDD ZnF_GATA 300 348 IPR000679 GO:0006355|GO:0043565
Gabi4472g00047 385 ProSiteProfiles GATA-type zinc finger domain profile. 295 331 IPR000679 GO:0006355|GO:0043565
Gabi4472g00047 385 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 295 357 - -
Gabi4472g00047 385 ProSitePatterns GATA-type zinc finger domain. 301 326 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00047 Gabi-Chr4472 513888 515614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00047 48 385 C2C2-Gata Transcription Factor Family AT5G66320 52.707 2.80e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi4472g00047 GATA 5.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00047 - - var:108335072 435.261