Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00042 ATGGAACAACAGCACCCGGAAACAACAACCACCACCGCTGCGGCGGAGCTCGTGAGCGGTGGTTTAAAGAATTTAGAGAAGTCGGAGAAGCTCGTCGGTGTCCCTGTCAAGCCCGCTCGCGATGTTGACATGGCGGAGAGAGACGATGGTTGTTGCCACGTGACCGTTTTGAAAAGGAAGCGTGGTCGTCCAGCTAAGAGCCTTACGAAAACGAAAACGAAAACGACTCCTCCGTCGAAGGACGACGAAGATGTTTGTTTTATATGCTTCGATGGCGGCAGCCTCGTTCTCTGTGATCGCCGGGGTTGCCCTAAAGCGTATCATCCCGCGTGTATTAAGCGAGACGAGGCTTTCTTCCAATCAAAGGCCAAATGGAATTGTGGTTGGCATATATGTAGCGTATGTGGGAAGGCATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGAGATGTACAAAGGATGCTGATTTTGTCTGTGTCAGAGGAAATAAAGGTTTATGTGGAATATGCACGAGGACTATAATGCTGATTGAAAACAGTGCCCAGGGAAATAAGGCAATGTGTGAAGTGGATTTTGATGACAGAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATTTATTTGAAAGAGAAGCTATCTTTAACGTTTGATGAGCTCCTTCGTGCTAAAAGCCCATGGAAAGGTGCTACTCCTATGAGTTGTATGGTTGAAACTCCTCAAGAATTTTTTCTTCTTAAAAATGACAAAGTTTCTGGTTATGAGAACTCCAGTATAGACACAGAATCAAATAATTCGAAAAACAAGAAGTCTAAGAGAGGAGATAAACATAGACATATTTGTGATGGTGTCTTGAATGATATTGGATGCAGTACACAAGACTTAACCCATATCCGTGAGCCAACTGGGAGTATATCTATAATAAAGAACCAAATTAACCCTAATGTATCAGCAATTGAAAATAGCACTAATGCAGGAGATGTGAGATTAGAAGCGTCTGGTGTTGCAGCGGGCATTTCATTAGTACTTCTCTCTACAGGGATGGAGCAGCCAATTAGTGATTTTGTGGATGATAAATCATGGCATTATCAGGATCCAACTGGGAAGGTTCAGGGACCTTTTTCTATGTTGCAGCTGTCTAAGTGGAATGCAAGTGGACATTTCCCTCCTGATCTCCGAATATGGAAGGTAGATGAGGAACAAGATAACTCTATATTGTTAGCTGATGCACTAAGTGGGAAGTTTTCTAAAAATGTGTCATTGCCATACAACAGCATACAGCTATCTTTGGAGGCCAGTGTTACATTGGATAATAAAGAGAATAGTCAGGATGGTGGGAGCATTGTCACAAGGAACGGAAATCATGCAAACAGCCAAATTGTCGAAGACAGCAGGGAGCAAAGGGTGGAAGATACTTGTACCCAATCTAATGGCAAAGATGAATCTGTTAGGAGCAATGGATGGCACTTTCAGTCTCCTTGTTGGACTGTACAAGCAGATGGGAATAACAATGAGGAACAAAGTGGAATTCTTGAAAGGAAGGAGGAGTCGTCAAAGGGTGAAATTTCTTGTCATGACCGTCCCCATGTATACCCTTCCCTACCTTCAACTACCTTTTCTGAGAAATTGAATGAGAATCCTTCTGATAAATTAAGGGAAGATCATAGGACTGAGGGAAACTCTGAAGATAATGGAAATTGTGGCTCAAACAGGATTTCTGAGGGTCAGAGTAATAGTGTGCAAAGTTGTCAGAAACAATTTGATGGTGAAGAGAATTCTGGGCAATCTTCTGGTCAGAACTGGAGATGCCCTGATGTAGTTCATCCAGCATGTAATACATCTACATGGCAGGCAATATTTGGTGATCCCTTTGATTTTGAAGAATCCGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATGGAGTCACTTGAAGGCATGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAGTTGACTGACGGTTGCATAACTGATTGTCTCAGTTTTGCACTTGGGCTTAGCCCAATGCATGATGCTGGTAAAGGTGATGCAGTAAGTTCCACAGGCGATTTACACTTACCTTCTCAATCCACAACAGCAGAGGAACCATTTCGGCAAGCAGATGTACACCATCATGCCTCAAGAAGTTCTGAAGTTGAGTCTACTTTCTCAAAGATTAGCTGGAATCCAACCAATCGATATTCCTGGGATCCAAATTATTGA 2235 0.4286 MEQQHPETTTTTAAAELVSGGLKNLEKSEKLVGVPVKPARDVDMAERDDGCCHVTVLKRKRGRPAKSLTKTKTKTTPPSKDDEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFQSKAKWNCGWHICSVCGKASHYMCYTCTYSLCKRCTKDADFVCVRGNKGLCGICTRTIMLIENSAQGNKAMCEVDFDDRSSWEYLFKVYWIYLKEKLSLTFDELLRAKSPWKGATPMSCMVETPQEFFLLKNDKVSGYENSSIDTESNNSKNKKSKRGDKHRHICDGVLNDIGCSTQDLTHIREPTGSISIIKNQINPNVSAIENSTNAGDVRLEASGVAAGISLVLLSTGMEQPISDFVDDKSWHYQDPTGKVQGPFSMLQLSKWNASGHFPPDLRIWKVDEEQDNSILLADALSGKFSKNVSLPYNSIQLSLEASVTLDNKENSQDGGSIVTRNGNHANSQIVEDSREQRVEDTCTQSNGKDESVRSNGWHFQSPCWTVQADGNNNEEQSGILERKEESSKGEISCHDRPHVYPSLPSTTFSEKLNENPSDKLREDHRTEGNSEDNGNCGSNRISEGQSNSVQSCQKQFDGEENSGQSSGQNWRCPDVVHPACNTSTWQAIFGDPFDFEESVSDLLAEVEAMESLEGMESPTSIMKCGEELTDGCITDCLSFALGLSPMHDAGKGDAVSSTGDLHLPSQSTTAEEPFRQADVHHHASRSSEVESTFSKISWNPTNRYSWDPNY 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 693 707 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 513 604 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 1 20 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 548 564 - -
Gabi4472g00042 744 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 613 736 - -
Gabi4472g00042 744 Gene3D - 363 421 IPR035445 -
Gabi4472g00042 744 ProSiteProfiles Zinc finger PHD-type profile. 83 149 IPR019787 -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 565 604 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 441 463 - -
Gabi4472g00042 744 CDD PHD5_NSD 85 130 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 708 722 - -
Gabi4472g00042 744 SUPERFAMILY GYF domain 356 414 IPR035445 -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 259 278 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 1 17 - -
Gabi4472g00042 744 SMART PHD_3 85 131 IPR001965 -
Gabi4472g00042 744 ProSitePatterns Zinc finger PHD-type signature. 86 146 IPR019786 -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 464 480 - -
Gabi4472g00042 744 CDD GYF 361 416 IPR003169 GO:0005515
Gabi4472g00042 744 Pfam GYF domain 364 405 IPR003169 GO:0005515
Gabi4472g00042 744 ProSiteProfiles GYF domain profile. 361 415 IPR003169 GO:0005515
Gabi4472g00042 744 SMART gyf_5 362 417 IPR003169 GO:0005515
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 441 490 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 684 726 - -
Gabi4472g00042 744 FunFam Zinc finger CCCH domain-containing protein 19 72 175 - -
Gabi4472g00042 744 MobiDBLite consensus disorder prediction 513 529 - -
Gabi4472g00042 744 SUPERFAMILY FYVE/PHD zinc finger 77 130 IPR011011 -
Gabi4472g00042 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 192 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00042 Gabi-Chr4472 437584 441718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00042 82 163 PHD Transcription Factor Family AT4G14920 34.146 6.44e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00042 - - lja:Lj0g3v0335379.1 933.71