Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00041 ATGGAACAACCGCTTCAACCGGAAACAGCCTCCAGCCTCGGCGCTTCCGAGAGGGCGGCGGCGGAGGTCTTGAGCCGCGGTGTTAGGGATTTGGAGGAGTCGCGGCTCGTTGGAGCTCCTGTCTCGCTCGCTCGCGATGTTGACATGGCGGAGAGAGACGGTGGTTGTAATTTGGAGGTCACCGTCGTGGACGGTGGCGCCGTTTTGAAAAGGAAGCGGGGTCGACCGGCGAAGGGGATTCCGAAAATGACTCCTCCTTTGAGGCAGAAGAAGGACGAGGAGGATGTTTGTTTTATATGCTTCGATGGTGGGAGCCTCGTTCTCTGCGATCGCCGGGGTTGTCCAAAAGCGTATCATCCCTCGTGTATTAAACGAGACGAGGCTTTCTTCCGTTCAAAGGCCAAATGGAATTGCGGCTGGCATATATGTAGCAGTTGTCAGAAGGCATCCCATTATATGTGCTATACTTGTACGTATTCTTTGTGCAAGGGATGTACAAAGGATGCTGATTTTGTCTCTGTCAGAGGAAATAAAGGTTTATGTGGAATATGCATGAGAACGATAATGCTGATTGAGAACAGTGCCCCGGGAAACAAGGAAACGTGTGAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGGAAGCTATCTCTAAAGCTTGATGATCTCCTTCGAGCTAAAAACCCATGGAAAGGTGATGCACCTATTAGTTGTAAGGTTCAAACTCCCCATGAACTTTATCATCTTAAAGATGACAAAGGTTCTGGTTCTGGTTCTGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAAAGCAAGAAGTTCAAGAGACAGCCGCAGCTTCTTAGTAAGGGAGATTGCTTTGATAGGATAAATTCAGGTGGTGACAGCATTGTGTCTTTGCCTGAATGCCCAAAATGGGCATCAAAGGAGCTTCTAGAGTTTGTTGCACATATGAAAAATGGTGATACATCACTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAATATGTAAGGGAGAACAGTCTTCGTGATCCTCAACAGAAATCCCAAATTGTTTGTGACTCTAGACTAGTAAATTTGTTTGGAAAAGCTCGTGTTGGCCATATTGAAATGCTAAAGCTCCTTGAATCGCACTTCGTTATAAAAGACAATGTCCCAACCGTAAATACTTTTGGAGCAGGAATTATTGGTGCTGTTGCCAGCGAGCGGGAGGCCACTGACAATTACAATAAACAGTTGATGTTAGTTAATGATACGAGATGTAAAACACATAAAAAAGATGGTGTGCTAGTGCCACAAAATAATCCAGATGTATATGCTGCAATAAATGTTGACAACATTAACTTGATCTACTTGCGGCGAAGTCTGATGGAGAATCTAACTGAAGATACTGAAAAGATTCATGAAAAGGTTGTTGGTTCATTCGTGCGGATAAGAATCTCAAGTAGCGATCAAAAACAAGATATGTATAGGCTTGTCCAAGTTGTAGGTACAGTTAAGGTTGCTGAACCTTACAGAATTGGCACAAGAATGACTGATATTAAGCTTGAAATTTCAAACTTAAACAGGAAGGAGGTCATATCGATAGATGAGATTTCGAATCAGGAGTTCTCTGAGGATGAATGCAAGCGCTTGCGTCAGAGTATACAATATGGGTTCTCAAAGAGATTGACTGTGGGAGAGATTCTGGAGAAAGCACTGACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAGGCTGAGATATTGCGGCTTAATCATCTTCGTGATAGAGCAAATGAAAAGGGGCATAGAAAAGAGCACAGAGAATGTGTGGAGAAGTTGCAGCTACTGAACTCACTGGAGGAACGTCAGCGTAGGCTGCATGAAATTCCGGATGTACACTCTGACCCCAATTTGGAGTCATTGTTTGAGTCCGATGAAGATGCTGCAGAGTCAGATGAAAGTAAGCAAGATGATAGATGCAGAACCCAAGACTTGCCCAGTACCCACGAGCCAATTGGGAATTTATGCATGATAAAGGATCATATCAACCCTAATGACACAGGAATTGATGATAGCTCTAACTTAGTTGTGACATCAGATGTGTCCAGCGTTCCGGTGGACATTTCATCATCACTCCTCTCTACAGGGATGGAGCTGGCATTACATGATTCTATGAATGACAAATCGTGGCATTATCAAGATCCAGCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGCTGTATAAGTGGAATGCAAATGGAGGTTTTCCTCCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGATAACTCTATATTGTTAACTGATGCACTAAGTCAGAAGTGTTCCAAAAATGTGTCATTGCCATACAACAACCAACTGCTGTCTTTAGGGGCCAGTTTGACATTGGATAATAAAGATAATAGTCAGGATGATGGGAGGAATGCAACAAAGAACGATATTTCAGCAGACAGCCGAATTATTGAGCAGAGTAGGGAACATAAAGTGGATGATATCGCTACCCAGTCTAATGGTAAAGATGAATCTGTTAGGAGCAATGGATGGCTTGACCTGCTGCATGTTAACCCTTCCCTACCACCAACTTCCTTTTCTGAGAAATTGAATGGGAATCCTTCTGATAAATTAAGGAAAGGTCATGGGATTGAGGGAAACTCTGAAGATAATGGAAATTATGGTTCGAACAGAACTTCTGATGGTCAGAGTAATAGTGGGAACAGTCATCAGAAGCAATCAGATAGTGAAGAGATTTCAGGGCAATCTTCTGGACAGAACTGGAAACACCCTAATGTAAATAGTTCTTCCAATTGCTTCGTTACCACACCTTCTCAAGTTTCTGGGACAAAAACATCACCACATAAGCTGGGATTTGATTTGAGTTGTCCCCCTTCCCCTCCACCATGTATTACATCTACATGGCAGGCAATCATTGGCGAACCCACTGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGTGAGGAATTGACTGACGGTTCTAAAAATGATTGTCTCAGTTTTGCAGATGGGCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGTGATTTACACTTACCATCTCAATCCACAGCAGCAGAGGAACCATTACGGCTTGGAGATATTCATCATAATCATCAATATCATCAAAGAATATCTGGGGAGCATTCCTCAAGAAGTTCTGAAGTTAAGGTGGGTACAAAGAATGTTAGTTTTTCAGGTAACCGATGGGTGTCAGGCTCAGAAAATTCACCCATTGTTCCCTCCCCTGCAACCTTGGGCATGGCTATAGACACCACTTGGAGACTTGGGTCAGAGAATACACACTTGGGATGGGGTGGAATGGATCAAAGAAATGCAAACACAGGTTGGGGAGTAGGACAAAGGGCAGTGCAGGAGAATAGGAGCTCGAATTCATACACTTCTGCAGTAACTTCAGGCTTTGGGGATAGCCAAACAAGACATGGCAGTGATCGACTTTCTGTGCCCAGAGATCGGGGTTTTCATGGTTATGGTAGGGAATCAGGTTCTGGTAGAGGCAGAACTGCATGGAACAGGCAACCAATATTTGGTGTTGGAAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTGCTGTAAGAAGGGAGCATCATGCGATTACTTGCACCCATAA 3813 0.4364 MEQPLQPETASSLGASERAAAEVLSRGVRDLEESRLVGAPVSLARDVDMAERDGGCNLEVTVVDGGAVLKRKRGRPAKGIPKMTPPLRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPSCIKRDEAFFRSKAKWNCGWHICSSCQKASHYMCYTCTYSLCKGCTKDADFVSVRGNKGLCGICMRTIMLIENSAPGNKETCEVDFDDKSSWEYLFKVYWMYLKGKLSLKLDDLLRAKNPWKGDAPISCKVQTPHELYHLKDDKGSGSGSENSCIDIESNNLKSKKFKRQPQLLSKGDCFDRINSGGDSIVSLPECPKWASKELLEFVAHMKNGDTSLLSQFDVQTLLLEYVRENSLRDPQQKSQIVCDSRLVNLFGKARVGHIEMLKLLESHFVIKDNVPTVNTFGAGIIGAVASEREATDNYNKQLMLVNDTRCKTHKKDGVLVPQNNPDVYAAINVDNINLIYLRRSLMENLTEDTEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVVGTVKVAEPYRIGTRMTDIKLEISNLNRKEVISIDEISNQEFSEDECKRLRQSIQYGFSKRLTVGEILEKALTLQAIRVNDLLEAEILRLNHLRDRANEKGHRKEHRECVEKLQLLNSLEERQRRLHEIPDVHSDPNLESLFESDEDAAESDESKQDDRCRTQDLPSTHEPIGNLCMIKDHINPNDTGIDDSSNLVVTSDVSSVPVDISSSLLSTGMELALHDSMNDKSWHYQDPAGKVQGPFSMLQLYKWNANGGFPPDLRIWRIDEKQDNSILLTDALSQKCSKNVSLPYNNQLLSLGASLTLDNKDNSQDDGRNATKNDISADSRIIEQSREHKVDDIATQSNGKDESVRSNGWLDLLHVNPSLPPTSFSEKLNGNPSDKLRKGHGIEGNSEDNGNYGSNRTSDGQSNSGNSHQKQSDSEEISGQSSGQNWKHPNVNSSSNCFVTTPSQVSGTKTSPHKLGFDLSCPPSPPPCITSTWQAIIGEPTDFDESVSDLLAEVEAMESLGGLESPTSIMKCGEELTDGSKNDCLSFADGLGPMLDAGKGDALSSTGDLHLPSQSTAAEEPLRLGDIHHNHQYHQRISGEHSSRSSEVKVGTKNVSFSGNRWVSGSENSPIVPSPATLGMAIDTTWRLGSENTHLGWGGMDQRNANTGWGVGQRAVQENRSSNSYTSAVTSGFGDSQTRHGSDRLSVPRDRGFHGYGRESGSGRGRTAWNRQPIFGVGNGGSYRPLPKGQRVCKFYESGCCKKGASCDYLHP 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 819 856 - -
Gabi4472g00041 1270 FunFam Zinc finger CCCH domain-containing protein 19 457 586 - -
Gabi4472g00041 1270 Gene3D - 739 796 IPR035445 -
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 877 969 - -
Gabi4472g00041 1270 SMART gyf_5 738 793 IPR003169 GO:0005515
Gabi4472g00041 1270 ProSiteProfiles SWIB/MDM2 domain profile. 313 396 IPR003121 -
Gabi4472g00041 1270 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 987 1270 - -
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 654 677 - -
Gabi4472g00041 1270 Pfam Plus-3 domain 461 564 IPR004343 GO:0003677
Gabi4472g00041 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 184 IPR013083 -
Gabi4472g00041 1270 ProSiteProfiles Plus3 domain profile. 456 589 IPR004343 GO:0003677
Gabi4472g00041 1270 Coils Coil 590 610 - -
Gabi4472g00041 1270 SUPERFAMILY GYF domain 734 791 IPR035445 -
Gabi4472g00041 1270 ProSitePatterns Zinc finger PHD-type signature. 97 157 IPR019786 -
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 1175 1199 - -
Gabi4472g00041 1270 SUPERFAMILY FYVE/PHD zinc finger 91 141 IPR011011 -
Gabi4472g00041 1270 CDD SWIB-MDM2_like 319 394 - -
Gabi4472g00041 1270 CDD PHD5_NSD 96 141 - -
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 905 969 - -
Gabi4472g00041 1270 Pfam GYF domain 740 781 IPR003169 GO:0005515
Gabi4472g00041 1270 ProSiteProfiles GYF domain profile. 737 791 IPR003169 GO:0005515
Gabi4472g00041 1270 SMART PHD_3 96 142 IPR001965 -
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 1175 1229 - -
Gabi4472g00041 1270 SUPERFAMILY Plus3-like 457 585 IPR036128 GO:0003677
Gabi4472g00041 1270 Gene3D - 457 586 IPR036128 GO:0003677
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 815 862 - -
Gabi4472g00041 1270 ProSiteProfiles Zinc finger PHD-type profile. 94 160 IPR019787 -
Gabi4472g00041 1270 Pfam SWIB/MDM2 domain 321 394 IPR003121 -
Gabi4472g00041 1270 SUPERFAMILY SWIB/MDM2 domain 318 395 IPR036885 -
Gabi4472g00041 1270 SUPERFAMILY CCCH zinc finger 1245 1269 IPR036855 GO:0046872
Gabi4472g00041 1270 SMART rtf1 456 566 IPR004343 GO:0003677
Gabi4472g00041 1270 Gene3D SWIB/MDM2 domain 313 401 IPR036885 -
Gabi4472g00041 1270 ProSiteProfiles Zinc finger C3H1-type profile. 1245 1270 IPR000571 GO:0046872
Gabi4472g00041 1270 FunFam Zinc finger CCCH domain-containing protein 19 86 186 - -
Gabi4472g00041 1270 MobiDBLite consensus disorder prediction 1200 1215 - -
Gabi4472g00041 1270 SMART swib_2 321 399 IPR019835 -
Gabi4472g00041 1270 CDD GYF 737 790 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00041 Gabi-Chr4472 413217 419704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00041 94 165 PHD Transcription Factor Family AT5G36670 37.838 4.56e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gabi4472g00041 Plus-3 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00041 - - aprc:113869503 2008.03