Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00034 ATGCGAACGCTTTGTGACGCTTGTGAGAGCGCGGCGGCTATCGTTTTCTGCGCCGCCGATGAGGCCGCACTCTGTCGTGCCTGTGATGAGAAGGTTCACATGTGCAATAAGCTAGCTAGTCGGCATGTAAGGGTTGGTCTTGCAAGTCCAAGTGATGTGCCAAGCTGTGACATATGTGAGAATGCACCAGCTTTCTTCTATTGCGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACTCATGGAAGATATCTTCGGTTTAGGCAAAGAGTTGAGTTTCCAGGAGATAAATCTAGTCATGCAGAAAACCCAGCTTTGCAACCTCTGGAACCAGGTGAGATTAAAAGAGGACAACATCCATTTCCCAGACTAAAAATGGGAGAGAAGCAACAAAATCACAGGATGCCGATGGTTCTATCGCCAGAATCTGATGCTGATGGGCATGCCAAGATGGAAACGAAAATGATTGATTTGAACATGCAGCCTAACAGAATACATGAACAAGCATCAAATAATCAGCCATAA 555 0.4523 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPSCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLRFRQRVEFPGDKSSHAENPALQPLEPGEIKRGQHPFPRLKMGEKQQNHRMPMVLSPESDADGHAKMETKMIDLNMQPNRIHEQASNNQP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00034 184 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gabi4472g00034 184 SMART bboxneu5 51 96 IPR000315 GO:0008270
Gabi4472g00034 184 ProSiteProfiles Zinc finger B-box type profile. 51 103 IPR000315 GO:0008270
Gabi4472g00034 184 SUPERFAMILY B-box zinc-binding domain 48 87 - -
Gabi4472g00034 184 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Gabi4472g00034 184 Pfam B-box zinc finger 53 85 IPR000315 GO:0008270
Gabi4472g00034 184 FunFam B-box zinc finger protein 19 2 92 - -
Gabi4472g00034 184 MobiDBLite consensus disorder prediction 105 129 - -
Gabi4472g00034 184 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 146 - -
Gabi4472g00034 184 Gene3D Classic Zinc Finger 2 91 - -
Gabi4472g00034 184 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi4472g00034 184 CDD Bbox1_BBX-like 4 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00034 Gabi-Chr4472 374641 377475 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00034 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 61.749 3.92e-75 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gabi4472g00034 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00034 - - gmx:100780544 361.688