Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00031 ATGCCTGCTCTTCTTCTCTTCATGGTGCTCTGTGCACCGTTCTTATCGTGCGCCGATCGTAGCTCTGTGACCGTCGCTGAGATCCAAGCCTTGACGTCCTTCAAGCTAAACCTTCATGATACTGTCGGAGCTCTCAACGTGGGATCCGTCATCGCCGGCGGCTCCGTGTGACTGGCGCGGGGTTGCCTGCAACAACGACCGAGTCACGGAGCTTCGCTTGCCTCGCCTTCAACTCGGTGGCAGACTCAGGACCGTATTTCAGAGTTGCGCATGCTGCGCAAGATAAGCCTTCGTTCGAACTCCTTCAACGGAACCATTCCTTCGTCGCTTTCCAAATGCACGCTCCTACGCTCCGTGTTCTTGCAGGACAACTCATTCTCCGGCAACCTCCCGGCGGAGATCGGGAACCTCACCAACCTTCAGATTCTCAACGTGGCTCAAAACCACCTCTCCGGCGGCGTTCCCGGCGAGTTCCCTCTTGGTCTCAAGTACATCGACCTCTCATCCAACGCCTTCTCCGGCGAGATTCCGAGCACTATTGGTAATCTCTCTCAGGTTCAGCTAATCAATCTTTCGTACAACCAGTTCTCAGGCGAGATTCCGGCGAGATTCGGGGAGCTTCAGCAGCTACAATTCCTCTGGCTTGACCACAACTTCCTGGGAGGAACGTTGCCTTCGGCAGTCGCTAATTGCTCTTCGCTTGTTCATCTGAGTGTAGAAGGAAATGCACTTGGCGGCATGATTCCGTCGGCGATTTCGGCGCTTCCGAATCTTCAGGTGATGTCCCTCTCCCAGAACAATCTAACTGGCTCCATTCCAGCTTCCGTTTTCTGTAATGTTTCGGTCTACGCGCCGTCGCTTCGGATTGTTCAACTTGGATTCAATGGTTTCACGGATTTCGTTGGGCCTGAGACGAGCACGTGTTTCAGCGTGCTTCAGGTTTTGGACATTCAGCACAATCGCATAAGAGGCACGTTTCCCTTGTGGTTAACCAATGTGACTACCATAACAGTGCTTGATGTTTCGAGCAATGCACTTTCCGGCGAGATTCCGCCAGAAATAGGAAACCTCGCCAAGTTGGAGGAGTTGAGGATGGCTAACAATTCGTTTACAGGCAACATTCCGGTGGAAATCAAGAAATGTGGGTTCCTGAGTGTTGTTGATTTTGAAGGCAACAAATTAAGCGGAGACGTTCCTTCGTTTTTCGGCGATATGACGGGCCTGAAGGTGTTGTCCCTTGGTGGGAATCACTTCTCTGGTTCAGTTCCGGTGAGTTTTGGAAACCTTTCCTTTCTTGAAACCTTGAGTTTAAGAGGCAATAGCTTAAATGGAAGTATGCCTGAGGCGATAACGAGATTGAGCAATTTGACGACACTAGACCTTAGTGGAAACAAGTTTACGGGTCAAGTTTATGGCAATATTGGGAATCTGAATAGATTAATGGTTCTCAATCTGAGTGGTAATGGCTTATCTGGAAAAATTCCTGCGAGTTTGGGAAATCTTTTCAAGCTAACTACACTTGACTTGAGCAAACAGAATCTTTCTGGAGAGTTGCCATTTGAGCTCTCGGGGCTGCCCAATCTGCAAGTTATTGCTCTTCAGGAGAACAAGCTATCTGGGGATGTACCTGAAGGGTTTAGCAGTCTGATGAGTTTGCAGTATGTGAACCTCAGCTCCAATGCTTTTTCTGGCCGTATTCCTGAAAACTATGGCTTTCTTCGTTCGCTGCTTGTTCTTTCATTGTCTGGTAATCACATTACAGGAATAATTCCTTCGGAAATTGGAAACTGCTCTGACATTGAAATTCTTGAGCTTGGATCAAATTCTTTGGCAGGTCATATTCCTAGTGATCTCTCTCGCCTCACCCATTTGAAAGTGCTTGATTTGGGTAGGAACAATTTAACGGGGGATATGCCTGAGGATATCTCCAAATGCTCGTCATTAACCACTTTGTTAGTGGATCACAACCATCTTTCAGGTTCCATACCAGGGTCATTGTCGGATCTATCAAACCTAACAATGCTGGATCTCTCTGCTAACAACTTGAGTGGTGATATTCCGAGCAAACTTTCTGTGATCCCTGGTTTGGTGTTCTTCAATGTCTCGGGGAATAACCTGGAAGGTGAGATACCGCCAACGTTGGGATCACGATTCAACAACCCCACTTTGTTTGCAGGTAATCAGGATTTATGTGGGAAGCCATTAGATAGGAAGTGCGAAGATACAAACGAAAGGGACAGAAAGAGGTTGATTGTGTTAGTTATTATCATTGCAGCTGGAGCTTGCTTTTTAGTGTTGTTGTGCTGTTTCTACATTTTTAGTTTATTGAGATGGCGTAAAAAGCTTAAGGAAGGAGTTTCTGGAGAAAAGAAAACGAGTCCTGCAAGAGCTAGTTCTAGAGCAAGCGGAGGTCGTGGCAGCTCTGAGAATGGTGGACCAAAACTTGTGATGTTCAACGCCAAAATTACACTAGCTGAAACAGTCGAAGCAACAAGACAATTCGACGAAGAGAATGTGCTGAGCAGAACAAGGTATGGATTAGTATTTAAGGCCTGCTATAACGATGGGATGGTCCTTTCCATTCGCAGGCTTCCTAATGGATCATTGGATGAGAACATGTTCAGAAAAGAAGCTGAATCACTAGGCAAAGTCAAGCACCGAAACTTAACCGTTCTCAGAGGTTACTATGCTGGGTCACCTGATATGAGACTCCTAGTCTACGATTACATGCCCAATGGAAACCTTGCAACCCTCCTCCAAGAAGCTTCTCATCAAGATGGCCATGTTCTAAATTGGCCAATGCGACACCTCATTGCACTAGGAATTGCCCGTGGTTTAGCCTTCCTACACCAATCCTCGATGGTTCATGGCGACGTGAAACCACAAAGCGTTCTGTTCGATGCAGATTTCGAAGCTCATTTATCAGATTTTGGGTTAGACCGGCTCACAATAGCCACTCCAGGCGAAGCCTCCACATCAACTTCCGTTGGTACATTAGGTTACGTCTCACCAGAAGCAGTCTTAACCGGTGAAGCCACGAAGGAGTCTGATGTGTACAGCTTTGGCATTGTGTTACTGGAGCTTCTGACAGGAAAGCGACCAGTCATGTTCACCCAGGACGAAGACATAGTGAAGTGGGTGAAAAAACAACTGCAGAGGGGTCAAATAACTGAGCTATTAGAGCCAGGTTTGCTTGAGTTGGACCCTGAATCATCAGAGTGGGAAGAGTTTTTGCTGGGTGTGAAAGTAGGATTGCTATGCACAGCACCTGACCCTCTTGACAGACCAACCATGTCTGACATCGTTTTCATGCTTGAAGGTTGCCGAGTTGGTCCTGATATCCCATCCTCCGCAGATCCCACCACTCAACCTTCTCCTGCATAA 3384 0.474 MPALLLFMVLCAPFLSCADRSSVTVAEIQALTSFKLNLHDTVGALNGXGSVIAGGSVXLARGCLQQRPSHGASLASPSTRWQTQDRISELRMLRKISLRSNSFNGTIPSSLSKCTLLRSVFLQDNSFSGNLPAEIGNLTNLQILNVAQNHLSGGVPGEFPLGLKYIDLSSNAFSGEIPSTIGNLSQVQLINLSYNQFSGEIPARFGELQQLQFLWLDHNFLGGTLPSAVANCSSLVHLSVEGNALGGMIPSAISALPNLQVMSLSQNNLTGSIPASVFCNVSVYAPSLRIVQLGFNGFTDFVGPETSTCFSVLQVLDIQHNRIRGTFPLWLTNVTTITVLDVSSNALSGEIPPEIGNLAKLEELRMANNSFTGNIPVEIKKCGFLSVVDFEGNKLSGDVPSFFGDMTGLKVLSLGGNHFSGSVPVSFGNLSFLETLSLRGNSLNGSMPEAITRLSNLTTLDLSGNKFTGQVYGNIGNLNRLMVLNLSGNGLSGKIPASLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGDVPEGFSSLMSLQYVNLSSNAFSGRIPENYGFLRSLLVLSLSGNHITGIIPSEIGNCSDIEILELGSNSLAGHIPSDLSRLTHLKVLDLGRNNLTGDMPEDISKCSSLTTLLVDHNHLSGSIPGSLSDLSNLTMLDLSANNLSGDIPSKLSVIPGLVFFNVSGNNLEGEIPPTLGSRFNNPTLFAGNQDLCGKPLDRKCEDTNERDRKRLIVLVIIIAAGACFLVLLCCFYIFSLLRWRKKLKEGVSGEKKTSPARASSRASGGRGSSENGGPKLVMFNAKITLAETVEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLPNGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGSPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHQSSMVHGDVKPQSVLFDADFEAHLSDFGLDRLTIATPGEASTSTSVGTLGYVSPEAVLTGEATKESDVYSFGIVLLELLTGKRPVMFTQDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPLDRPTMSDIVFMLEGCRVGPDIPSSADPTTQPSPA 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00031 1128 SUPERFAMILY L domain-like 505 737 - -
Gabi4472g00031 1128 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 474 566 - -
Gabi4472g00031 1128 SUPERFAMILY L domain-like 285 568 - -
Gabi4472g00031 1128 PRINTS Leucine-rich repeat signature 670 683 - -
Gabi4472g00031 1128 PRINTS Leucine-rich repeat signature 457 470 - -
Gabi4472g00031 1128 FunFam Piriformospora indica-insensitive protein 2 351 449 - -
Gabi4472g00031 1128 Pfam Leucine Rich repeat 455 469 IPR001611 GO:0005515
Gabi4472g00031 1128 ProSiteProfiles Protein kinase domain profile. 835 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00031 1128 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 462 744 - -
Gabi4472g00031 1128 Gene3D Ribonuclease Inhibitor 81 161 IPR032675 -
Gabi4472g00031 1128 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 84 171 - -
Gabi4472g00031 1128 FunFam Probable LRR receptor-like serine/threonine-protein kinase At4g36180 251 350 - -
Gabi4472g00031 1128 Gene3D Ribonuclease Inhibitor 250 348 IPR032675 -
Gabi4472g00031 1128 SMART LRR_sd22_2 256 283 - -
Gabi4472g00031 1128 SMART LRR_sd22_2 334 360 - -
Gabi4472g00031 1128 SMART LRR_sd22_2 670 696 - -
Gabi4472g00031 1128 SMART LRR_sd22_2 430 459 - -
Gabi4472g00031 1128 SMART LRR_sd22_2 160 186 - -
Gabi4472g00031 1128 SMART LRR_sd22_2 622 645 - -
Gabi4472g00031 1128 SMART LRR_typ_2 138 161 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 208 232 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 670 701 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 526 549 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 430 453 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 90 114 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 622 646 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 454 474 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 574 598 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 406 429 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 256 280 IPR003591 -
Gabi4472g00031 1128 SMART LRR_typ_2 478 502 IPR003591 -
Gabi4472g00031 1128 Pfam Protein kinase domain 845 1102 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00031 1128 Pfam Leucine rich repeat 602 659 IPR001611 GO:0005515
Gabi4472g00031 1128 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Gabi4472g00031 1128 Pfam Leucine rich repeat 387 443 IPR001611 GO:0005515
Gabi4472g00031 1128 Pfam Leucine rich repeat 313 370 IPR001611 GO:0005515
Gabi4472g00031 1128 Pfam Leucine rich repeat 163 219 IPR001611 GO:0005515
Gabi4472g00031 1128 SUPERFAMILY L domain-like 84 345 - -
Gabi4472g00031 1128 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 911 1114 - -
Gabi4472g00031 1128 MobiDBLite consensus disorder prediction 790 815 - -
Gabi4472g00031 1128 FunFam Putative LRR receptor-like serine/threonine-protein kinase 798 910 - -
Gabi4472g00031 1128 MobiDBLite consensus disorder prediction 793 807 - -
Gabi4472g00031 1128 Gene3D Ribonuclease Inhibitor 162 249 IPR032675 -
Gabi4472g00031 1128 Gene3D Ribonuclease Inhibitor 349 450 IPR032675 -
Gabi4472g00031 1128 SUPERFAMILY Protein kinase-like (PK-like) 814 1116 IPR011009 -
Gabi4472g00031 1128 Gene3D Phosphorylase Kinase; domain 1 808 910 - -
Gabi4472g00031 1128 Gene3D Ribonuclease Inhibitor 451 749 IPR032675 -
Gabi4472g00031 1128 Gene3D Transferase(Phosphotransferase) domain 1 911 1114 - -
Gabi4472g00031 1128 Pfam Leucine Rich Repeat 481 502 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00031 Gabi-Chr4472 337398 340789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00031 4 1128 Receptor kinase-like Gene Family AT4G36180 67.575 0.0 1447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Gabi4472g00031 Pkinase 3.7e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00031 - - gmx:100305362 1929.84