Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00030 ATGGTTGCTTTCAGCGGCGATGAAACTGCTCCATTCTTCGGGTTCCTGGGCGCCGCCGCTGCCCTAATTTTCTCCTGCATGGGAGCGGCTTACGGGACTGCAAAAAGCGGTGTTGGGGTTGCGTCGATGGGTGTGATGAGACCCGAGCTTGTGATGAAATCGATTGTGCCTGTTGTGATGGCTGGTGTGTTGGGTATCTATGGCTTGATCATCGCTGTCATTATCAGCACTGGCATTAACCCTAAGGCCAAACCTTACTATCTCTTTGATGGCTACGCTCACTTTTCTTCTGGCCTTGCTTGTGGTCTCGCTGGCCTTGCTGCTGGCATGGCCATTGGTATTGTTGGCGATGCTGGCGTTAGAGCAAATGCCCAACAACCAAAGCTTTTTGTTGGAATGATTCTCATCCTCATCTTTGCTGAGGCATTGGCGTTGTATGGTCTCATTGTTGGCATCATCCTCTCGTCCCGTGCTGGCCAATCCAGAGCTGATTAA 495 0.5131 MVAFSGDETAPFFGFLGAAAALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHFSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00030 164 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Gabi4472g00030 164 FunFam V-type proton ATPase proteolipid subunit 10 161 - -
Gabi4472g00030 164 NCBIfam V-type ATPase subunit C 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Gabi4472g00030 164 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Gabi4472g00030 164 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 160 - -
Gabi4472g00030 164 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gabi4472g00030 164 Pfam ATP synthase subunit C 97 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gabi4472g00030 164 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Gabi4472g00030 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi4472g00030 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi4472g00030 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi4472g00030 164 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gabi4472g00030 164 SUPERFAMILY F1F0 ATP synthase subunit C 13 76 IPR035921 -
Gabi4472g00030 164 Gene3D - 10 161 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00030 Gabi-Chr4472 320833 322562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00030 1 164 Primary Pumps ATPases(2) AT2G16510 95.732 1.72e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00030 K02155 - atr:18436742 276.944