Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00029 ATGATGGAGTCGATGGAGTCATGTGTCCCACCGGGGTTTCGGTTCCACCCTACAGATGAAGAGCTTGTTGGTTATTATCTGAGGAAGAAAATAGCTTCTCAGAAGATTGACCTTGACGTTATCAGAGACATCGATCTATATCGTATTGAACCATGGGATCTCCAAGAGAGCTGCAGGATTGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAAAAGTATCCAACAGGAACAAGAACTAACAGAGCTACCATGGCTGGGTTCTGGAAGGCCACAGGAAGAGATAAGGCAGTGTATGACAAGACAAAACTAATTGGAATGAGGAAGACACTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAGAAAACTGATTGGATCATGCATGAGTATAGGCTTGAATCTGATGAGAATGGACCTCCTCAGGAAGAAGGATGGGTTGTGTGCAGAGCATTCAAGAAAAAAGCCACTGCCCAAACGAAGAGTGCTGAAGGATGGGACTCAAGCTACTTCTATGAAGAAGCAAGTGGGGTCAGCACCGTGGTTGATCCACTTGATATCCTCTCACGGCAACCTCAAAGCTTTTTAGCTCAAAGTTTCATGTGTAAGCAAGAGATAGAAGCAGATAACATGAGCTTCATGAACCAAGACCAATTTGTACAGCTTCCTCAGCTAGAAAGCCCTTCTTTGCCATTATTAAAGAGGCCAAACACAGTGTCCTTAATACCAGACAATAACGAAGATGATAATCAAAACAAATTATCCAACAACAACACAGAGAAAGTGACTGACTGGAGAGCTCTTGACAAGTTTGTGGCTTCTCAACTGAGTCAAGAAGACATGCATGAAACTAACGCACTCTCAAGCTTTGAAACCAATACCAGCTCGGACATGGCTTTGTTTCTACTGCAGAGTAGTAGGGATGAAGGGAACAAGTTAAGCCCGTTTTTAAGTACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1011 0.4283 MMESMESCVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDIDLYRIEPWDLQESCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGPPQEEGWVVCRAFKKKATAQTKSAEGWDSSYFYEEASGVSTVVDPLDILSRQPQSFLAQSFMCKQEIEADNMSFMNQDQFVQLPQLESPSLPLLKRPNTVSLIPDNNEDDNQNKLSNNNTEKVTDWRALDKFVASQLSQEDMHETNALSSFETNTSSDMALFLLQSSRDEGNKLSPFLSTSSDCDIGICVFEK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00029 336 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Gabi4472g00029 336 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Gabi4472g00029 336 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 256 - -
Gabi4472g00029 336 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Gabi4472g00029 336 FunFam NAC domain-containing protein 18 162 - -
Gabi4472g00029 336 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00029 Gabi-Chr4472 291564 293666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00029 2 335 NAC Transcription Factor Family AT2G18060 65.217 7.95e-167 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4472g00029 NAM 3.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00029 - - aprc:113869508 610.142