Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00028 ATGTCTGCTGCCGGAGAAGGTGATGGTCCCGCCGTCGAACTAAGGGTGGAGGAGACCAAAGCGATAGAGGAGACTAAGCCAGTGAAGGAGAAGAAACCCAAGGCTCCTAAAGAAAAGAAGCCCAAGCAGGCCAAAACAGCTTCACATCCTCCATATTTTCAGATGATTAAGGAGGCCTTGTTGGCTCTGAACGAGAAGGGTGGTTCAAGCCCTCACGCCATAGCTAAGTACATGGAAGAGAAGCACAAGTCGGTGCTCCCTGCGAATTTCAAGAAGATTCTGGGCTTGCAGCTGAAGAATCAAGCTGCGAAAGGGAAGCTTGTGAAGATCAAGGCTTCTTACAAGCTATCTGAAGCTGCGAAGAAGGAAAGCAGAGCCAGTGTCACGAGGGGCACCACAGAGAAACAGAAACAGAAACAGCGCCCAAAACGAAGCAAAGTCACAACTGCCGCCGCCGCCACTCCAAAGGGCAAGAAAACCGAGGCGGTTAAGAAGGTTGGGCCGAAGAAAACGAAGAAGGTGTCTACACCATCGAAGCCCAAGCAGCCCAAGTCCATTAAGTCTCCTTCCAAGAGGGCTAGGAAAGCTACTGCTGTTGCCGCTTGA 606 0.5132 MSAAGEGDGPAVELRVEETKAIEETKPVKEKKPKAPKEKKPKQAKTASHPPYFQMIKEALLALNEKGGSSPHAIAKYMEEKHKSVLPANFKKILGLQLKNQAAKGKLVKIKASYKLSEAAKKESRASVTRGTTEKQKQKQRPKRSKVTTAAAATPKGKKTEAVKKVGPKKTKKVSTPSKPKQPKSIKSPSKRARKATAVAA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00028 201 MobiDBLite consensus disorder prediction 1 52 - -
Gabi4472g00028 201 PANTHER HISTONE H1 26 195 - -
Gabi4472g00028 201 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4472g00028 201 SUPERFAMILY "Winged helix" DNA-binding domain 45 126 IPR036390 -
Gabi4472g00028 201 Pfam linker histone H1 and H5 family 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4472g00028 201 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4472g00028 201 MobiDBLite consensus disorder prediction 116 201 - -
Gabi4472g00028 201 CDD H15 46 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gabi4472g00028 201 MobiDBLite consensus disorder prediction 116 138 - -
Gabi4472g00028 201 FunFam Histone H1 44 146 - -
Gabi4472g00028 201 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi4472g00028 201 PRINTS Histone H5 signature 172 189 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi4472g00028 201 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi4472g00028 201 PRINTS Histone H5 signature 137 151 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gabi4472g00028 201 Gene3D - 43 128 IPR036388 -
Gabi4472g00028 201 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00028 Gabi-Chr4472 264819 265802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00028 36 116 Single Myb Histone (SMH) Gene Family AT1G72740 38.272 8.99e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00028 K11275 - gmx:100500169 209.92