Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00025 ATGAAGCGGGCAAGGAAATCGAACAGGGTTTCGTGGGCTCCTGGATCTAATCTGTGTCAGGTAAAATTGTTCTTATCCGAGGACTACCCTTCAAAAATTGGCCACAAATCTCAAGATCATCTTCAGGAAAAGACTTCGTCAATGTTGCCTTCAAGTAATAATGAATGTATTGATTTACCACCTGGGTTTGAAGGCAATCATTTCCTGAACCAACCAAAGGCTGAAATCTCTCACATTTCTCTGATCAAATGGGAATGCTCTCCTTTGTTTGCTTTGAGTCAGCGTTGGTGCGTTGCAGCTGGTGAAGAAAGTCGGGAGAAAGAGGATCAGAAGCTAAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCACGTCTTTCTGCTATTCCTCCTAACCCTTCTGTTTCTCTTGAGGTTGAGGAGGAAGATTATGATGATAACCTCACTCCTCTAATCCCTATCATTCCCATTGAGGAAGAAGATTCGATGGATATTAAACCTGAAGTGGCAGTCACAAAACTTGCTGACACCCCCACCAATTTGCAGTCACAAAACCTGCAGCAATATATACCGGCAACACCTCCCATTATTTCACAATGCAATACCTCCTCTACTACTGCTCCCTCATCTGCCTGTGGAAAGCCCGTTCCCGGTGTATCTCCTTGTTTGGAGACAGATCTAGCTGCAGCAGCTTCTGCTGTCGTAGCAGCCATCATGAAGAGTAATGAGCAAGGAAGCTTGATTGATATGGATCTACTTCTTAAAATATTTAATGATCCAATCATGATTGGGAAATTAATTAAAGAACATAGAACTGCATCCAGCACTGTTAGTGCATCCCCAAATACTGTGGGTTTACCCACTTCTGGATTGAAACCTGCAACTTCATCAGTTCCATTGTCTAAACCTACATCCGAGGCGGTACCTTCTGGGACTACACCCACAAGTACAGTAGGTTTATTATTTCCTGCTTCTGGGCCAAAGCAAGCAACTCCATCAGTTGCATTGTTTACACCCGCACCTGTTAAGCCAGCAGTTCCGTCTGTTTCCGTGTTGACATCTACACTTGATAAGCCAACAATTCCATCTGTTTCAGTGTTGACATCTACATTTGATAAGCCAGCAGCAACTCCATCAGTTCCATTGTCTAGGCCTGTAGCTGGTATATCAGCAGCAACTCACTCAATTACCCTGCCTATAACTCCAACTCTATCCACACCTATGCCTCATATGCACTGGCCTGTCAACAAAAATATTTCCCATATGTCAAATGGAATGCTGCCATCTTTAAATACTTCTCTTCAACAAGATGCAGTTCTGTCATCTGGGGTAAAGCGATCAGCATCGTTGGCTTTTGTTTCCTCTGGTGAATTGAGCACGGTGGCATTTCCTTCTGCCACTGTGAACTTGCTTGCCGTTGCAAACCAGGTGCGACCGGCTGCTAGTACAGTGCCTTGTCAATCAGGTACTGGTACATCATTTCCTAAGGATGCCAACTATTATAAGAACCTTATTAGGCAACATGGTGCAGATAAGCAAGATAAGCAGGACTCACAAATAGGTATCCGTCATAATAATTTCCAAGATTTGAAATCGGTACATAACATCATTAAACCGGGGGAAGTGATATTCAAAACTCAGAAACCTTGCATATACTTTAATAGCTCAAGAGGGTGCCGGAATGGTTCCAATTGCCCTTATAAACATGATATGTCAGTTCAATGGGGAGCTGGTAACGTCCTTGTGGCCGAAAATGCAAAAAGATTGAAACTAGGACCAGAAATTAAGGGGAGGATATAG 1797 0.4324 MKRARKSNRVSWAPGSNLCQVKLFLSEDYPSKIGHKSQDHLQEKTSSMLPSSNNECIDLPPGFEGNHFLNQPKAEISHISLIKWECSPLFALSQRWCVAAGEESREKEDQKLREMRVLEAVYPRLSAIPPNPSVSLEVEEEDYDDNLTPLIPIIPIEEEDSMDIKPEVAVTKLADTPTNLQSQNLQQYIPATPPIISQCNTSSTTAPSSACGKPVPGVSPCLETDLAAAASAVVAAIMKSNEQGSLIDMDLLLKIFNDPIMIGKLIKEHRTASSTVSASPNTVGLPTSGLKPATSSVPLSKPTSEAVPSGTTPTSTVGLLFPASGPKQATPSVALFTPAPVKPAVPSVSVLTSTLDKPTIPSVSVLTSTFDKPAATPSVPLSRPVAGISAATHSITLPITPTLSTPMPHMHWPVNKNISHMSNGMLPSLNTSLQQDAVLSSGVKRSASLAFVSSGELSTVAFPSATVNLLAVANQVRPAASTVPCQSGTGTSFPKDANYYKNLIRQHGADKQDKQDSQIGIRHNNFQDLKSVHNIIKPGEVIFKTQKPCIYFNSSRGCRNGSNCPYKHDMSVQWGAGNVLVAENAKRLKLGPEIKGRI 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00025 598 MobiDBLite consensus disorder prediction 273 313 - -
Gabi4472g00025 598 ProSiteProfiles Zinc finger C3H1-type profile. 543 571 IPR000571 GO:0046872
Gabi4472g00025 598 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00025 Gabi-Chr4472 230477 240688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00025 82 152 Homeobox Transcription Factor Family AT4G02560 43.662 2.57e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4472g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00025 - - adu:107488052 640.188