Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00019 ATGGAACCTCAACAACAACAACAGCACTCACCAAACGAGGATGGCGGCAGTGGAAAAGGGGGATTTCTGAGCAGGCAAAGTAGTACACGGTGGACTCCCACAACAGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCAAGTGCAGAACAGATTCAGAGAATCTCTGCTAGGCTGAGACAGTATGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAAAACCACAAAGCTCGAGAAAGGCAGAAGAAGAGGTTCACCTCTGATGTTCCCATGCAAAGAGGTGGAACTAATGCTCCTTGGAAACCTGAAGACCCCATTCACACCAAGTATTCCAACATATCTGCCGGGATCACTTCGGCGTCTTCTTCTTCTGCTGAGATGGTTACTGTTGGTCAGATGGGTACTTATGGGTATGGATCTGTGCCCATGGAAAAGAGTTTTAGGGACTGCTCAATATCAGCTGGAGGCAGCAGTGGCCATGTTGGAAGTGCCATAAACCACAACTTGGGATGGGTCGGCGTGGACCCCTATTCCTCAGCCTACGCCACTTTCTTTGACAAAATAAGGACAACTGAAGAAACCCTTGAAGAAGAACAAGAAGATGATAGTGCCCCTGAGATTGAAACCCTCCCTTTGTTCCCTATGCACGGTGAGGATATCCATGGCTATTACAACCTCAATTCGAATTCTTCTAACTATGGTGGTGGCTGGTATCAGACCGAAGATGGGTTCAAGAACGTTTCTCGTACTTCCTTGGAGCTTAGTCTCAACTCCTACACTGGCAGATCTCCAGATTTCGCTTGA 828 0.465 MEPQQQQQHSPNEDGGSGKGGFLSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDVPMQRGGTNAPWKPEDPIHTKYSNISAGITSASSSSAEMVTVGQMGTYGYGSVPMEKSFRDCSISAGGSSGHVGSAINHNLGWVGVDPYSSAYATFFDKIRTTEETLEEEQEDDSAPEIETLPLFPMHGEDIHGYYNLNSNSSNYGGGWYQTEDGFKNVSRTSLELSLNSYTGRSPDFA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00019 275 Pfam Homeodomain 28 89 IPR001356 GO:0003677
Gabi4472g00019 275 ProSiteProfiles 'Homeobox' domain profile. 24 90 IPR001356 GO:0003677
Gabi4472g00019 275 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 6 271 IPR044555 GO:0003700|GO:0099402
Gabi4472g00019 275 MobiDBLite consensus disorder prediction 89 114 - -
Gabi4472g00019 275 SUPERFAMILY Homeodomain-like 22 95 IPR009057 -
Gabi4472g00019 275 SMART HOX_1 26 94 IPR001356 GO:0003677
Gabi4472g00019 275 MobiDBLite consensus disorder prediction 1 34 - -
Gabi4472g00019 275 CDD homeodomain 29 91 IPR001356 GO:0003677
Gabi4472g00019 275 Gene3D - 23 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00019 Gabi-Chr4472 180978 182476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00019 22 265 Wox Gene Family AT2G17950 41.319 7.71e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gabi4472g00019 Homeodomain 1.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00019 - - vra:106776674 423.705