Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00006 ATGGGTATCTGTTTCTCCGCTACGAAGGTCAGCGGTTCTAACAGCAACTCCACCAACGCCGCCGGCTCCGGCGGCAATCGCAATCGCAAATCTTCAAAGCCGCAATCAAGGACGTCGGCAACGGCGACGAGGACGACGACGGAGACGGTGGTGACGGTGCATAAGCAACAAGCGTCGAACGGGCAACGGCGGAGAGTGCCGGAGGAGACCCAGAAGAATTCGCAGAACCAAAGACCCAAAGAGAAAACGAACACGCGGCGCCAAGGTGCCCATCTACCGTGCGGAAAGCGCACAGATTTCGGTTACGAGAAAGACTTTGACCAGAGATTCTCCCTCGGGAAATTGTTGGGACATGGCCAATTCGGTTACACCTATGTTGGAATAAATAAAGCTAATGGGGATCGTGTTGCCGTTAAGAGACTCGAGAAAAACAAGATGGTTCTCCCCATAGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATTTTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCCTTTGAGGATGATTCATATGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCTAAGAAGGACAGTCGTTATACTGAAAAAGATGCTGCAGTGGTTGTAAGACAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAGCCAGAGAATTTCCTTTTCAAATCAGCCAGAGAAGATTCATCTTTAAAGGCTACCGACTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGCAGTGCTTATTATGTTGCACCAGAAGTATTAAAACGGAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACCGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCCGATTTCCGTCGGAAACCGTGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTTAAAGATCCTCGGGCAAGATTAACTGCTGCTCAGGCTCTATCACATCCATGGGTTAAAGAAGGAGGAGAGGCATTGGAGATTCCTATTGATATATCTGTCTTGAACAACATGCGACAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCACTGAGGGCATTGGCTAGCACGCTTAATGAAGAAGAGTTATCTACTCTAAAAGATCAGTTCGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTACAAGCGATAGACAGTAACACCGACGGGTTAGTGGATTTCACTGAGTTTGTAGCAGCTACGTTACATGTGCATCAATTAGAGGAACATGACTCTGACAAGTGGCAGCATCGGTCACAGACTGCTTTTGAGAAATTTGACTTAGATAAGGATGGCTTTATTACTCCAGATGAACTTAGAATGCATACGGGTTTGAGAGGCTCCATTGATCCATTGCTTGAGGAAGCCGATATTGACAAAGATGGAAAAATCAGCTTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCATTGGTTCTCGACATGTAACAAGCCCAGCTCGCCATCAGCGGAAGATCTAG 1716 0.4481 MGICFSATKVSGSNSNSTNAAGSGGNRNRKSSKPQSRTSATATRTTTETVVTVHKQQASNGQRRRVPEETQKNSQNQRPKEKTNTRRQGAHLPCGKRTDFGYEKDFDQRFSLGKLLGHGQFGYTYVGINKANGDRVAVKRLEKNKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSAREDSSLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVKEGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEELSTLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQHRSQTAFEKFDLDKDGFITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRHVTSPARHQRKI 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00006 571 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Gabi4472g00006 571 Pfam Protein kinase domain 112 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00006 571 FunFam CDPK-related kinase 1 103 195 - -
Gabi4472g00006 571 SMART efh_1 526 554 IPR002048 GO:0005509
Gabi4472g00006 571 SMART efh_1 417 445 IPR002048 GO:0005509
Gabi4472g00006 571 SMART efh_1 454 482 IPR002048 GO:0005509
Gabi4472g00006 571 SMART efh_1 496 524 IPR002048 GO:0005509
Gabi4472g00006 571 SMART serkin_6 110 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00006 571 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
Gabi4472g00006 571 Gene3D - 391 550 - -
Gabi4472g00006 571 MobiDBLite consensus disorder prediction 1 96 - -
Gabi4472g00006 571 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Gabi4472g00006 571 Gene3D Phosphorylase Kinase; domain 1 103 195 - -
Gabi4472g00006 571 MobiDBLite consensus disorder prediction 7 60 - -
Gabi4472g00006 571 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Gabi4472g00006 571 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Gabi4472g00006 571 MobiDBLite consensus disorder prediction 61 87 - -
Gabi4472g00006 571 ProSiteProfiles EF-hand calcium-binding domain profile. 530 557 IPR002048 GO:0005509
Gabi4472g00006 571 Gene3D - 411 480 - -
Gabi4472g00006 571 Gene3D Transferase(Phosphotransferase) domain 1 196 390 - -
Gabi4472g00006 571 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Gabi4472g00006 571 SUPERFAMILY EF-hand 399 552 IPR011992 -
Gabi4472g00006 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Gabi4472g00006 571 PANTHER SERINE/THREONINE-PROTEIN KINASE 84 539 - -
Gabi4472g00006 571 FunFam Calcium-dependent protein kinase 28 411 480 - -
Gabi4472g00006 571 ProSiteProfiles Protein kinase domain profile. 110 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00006 571 Pfam EF-hand domain pair 498 551 IPR002048 GO:0005509
Gabi4472g00006 571 Pfam EF-hand domain pair 417 479 IPR002048 GO:0005509
Gabi4472g00006 571 ProSitePatterns EF-hand calcium-binding domain. 535 547 IPR018247 -
Gabi4472g00006 571 SUPERFAMILY Protein kinase-like (PK-like) 108 382 IPR011009 -
Gabi4472g00006 571 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Gabi4472g00006 571 FunFam calcium-dependent protein kinase 28-like 196 389 - -
Gabi4472g00006 571 CDD STKc_CAMK 109 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00006 Gabi-Chr4472 65965 71308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00006 1 564 EF-hand Containing Proteins AT2G17890 75.923 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4472g00006 Pkinase 5.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00006 K13412 - gmx:100817249 966.452