Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00005 ATGGGTATCTGTTTCTCCGCTACGAAGGTCAGCGGTTCTAACAGCAACTCCACCAACGCCGCCGGCTCCGGCGGCAATCGCAATCGCAAATCTTCAAAGCCGCAATCAAGGACGTCGCAACAAGCGTCGAACGGGCAACGGCGGAGAGTGCCGGAGGAGACCCAGAAGAATTCGCAGAACCAAAGACCCAAAGAGAAAACGAACACGCGGCGCCAAGGTGCCCATCTACCGTGCGGAAAGCGCACAGATTTCGGTTACGAGAAAGACTTTGACCAGAGATTCTCCCTCGGGAAATTGTTGGGACATGGCCAATTCGGTTACACCTATGTTGGAATAAATAAAGCTAATGGGGATCGTGTTGCCGTTAAGAGACTCGAGAAAAACAAGATGGTTCTCCCCATAGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATTTTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCCTTTGAGGATGATTCATATGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCTAAGAAGGACAGTCGTTATACTGAAAAAGATGCTGCAGTGGTTGTAAGACAGATGCTTAAGGTTGCGGCTGAGTGTCATTTACATGGTTTGGTACATCGGGACATGAAGCCAGAGAATTTCCTTTTCAAATCAGCCAGAGAAGATTCATCTTTAAAGGCTACCGACTTTGGTTTGTCTGATTTCATAAAACCTGGAAAGAGGTTTCAAGATATTGTTGGCAGTGCTTATTATGTTGCACCAGAAGTATTAAAACGGAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACCGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCCGATTTCCGTCGGAAACCGTGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTTAAAGATCCTCGGGCAAGATTAACTGCTGCTCAGGCTCTATCACATCCATGGGTTAAAGAAGGAGGAGAGGCATTGGAGATTCCTATTGATATATCTGTCTTGAACAACATGCGACAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCACTGAGGGCATTGGCTAGCACGCTTAATGAAGAAGAGTTATCTACTCTAAAAGATCAGTTCGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAAGAATCACGTGTACTAGAGATATTACAAGCGATAGACAGTAACACCGACGGGTTAGTGGATTTCACTGAGTTTGTAGCAGCTACGTTACATGTGCATCAATTAGAGGAACATGACTCTGACAAGTGGCAGCATCGGTCACAGACTGCTTTTGAGAAATTTGACTTAGATAAGGATGGCTTTATTACTCCAGATGAACTTAGAATGCATACGGGTTTGAGAGGCTCCATTGATCCATTGCTTGAGGAAGCCGATATTGACAAAGATGGAAAAATCAGCTTACCAGAATTTCGTAGACTTCTAAGAACTGCAAGCATTGGTTCTCGACATGTAACAAGCCCAGCTCGCCATCAGCGGAAGATCTAG 1668 0.4424 MGICFSATKVSGSNSNSTNAAGSGGNRNRKSSKPQSRTSQQASNGQRRRVPEETQKNSQNQRPKEKTNTRRQGAHLPCGKRTDFGYEKDFDQRFSLGKLLGHGQFGYTYVGINKANGDRVAVKRLEKNKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSAREDSSLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVKEGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEELSTLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQHRSQTAFEKFDLDKDGFITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRHVTSPARHQRKI 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00005 555 Pfam EF-hand domain pair 482 535 IPR002048 GO:0005509
Gabi4472g00005 555 Pfam EF-hand domain pair 401 463 IPR002048 GO:0005509
Gabi4472g00005 555 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Gabi4472g00005 555 Gene3D Transferase(Phosphotransferase) domain 1 180 374 - -
Gabi4472g00005 555 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Gabi4472g00005 555 FunFam Calcium-dependent protein kinase 28 395 464 - -
Gabi4472g00005 555 MobiDBLite consensus disorder prediction 49 71 - -
Gabi4472g00005 555 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Gabi4472g00005 555 Gene3D - 375 534 - -
Gabi4472g00005 555 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Gabi4472g00005 555 FunFam calcium-dependent protein kinase 28-like 180 373 - -
Gabi4472g00005 555 ProSiteProfiles Protein kinase domain profile. 94 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00005 555 SUPERFAMILY Protein kinase-like (PK-like) 92 366 IPR011009 -
Gabi4472g00005 555 Pfam Protein kinase domain 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00005 555 PANTHER SERINE/THREONINE-PROTEIN KINASE 70 523 - -
Gabi4472g00005 555 SMART serkin_6 94 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4472g00005 555 MobiDBLite consensus disorder prediction 7 48 - -
Gabi4472g00005 555 ProSitePatterns EF-hand calcium-binding domain. 519 531 IPR018247 -
Gabi4472g00005 555 SMART efh_1 438 466 IPR002048 GO:0005509
Gabi4472g00005 555 SMART efh_1 480 508 IPR002048 GO:0005509
Gabi4472g00005 555 SMART efh_1 510 538 IPR002048 GO:0005509
Gabi4472g00005 555 SMART efh_1 401 429 IPR002048 GO:0005509
Gabi4472g00005 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Gabi4472g00005 555 ProSiteProfiles EF-hand calcium-binding domain profile. 514 541 IPR002048 GO:0005509
Gabi4472g00005 555 SUPERFAMILY EF-hand 383 536 IPR011992 -
Gabi4472g00005 555 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Gabi4472g00005 555 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Gabi4472g00005 555 Gene3D Phosphorylase Kinase; domain 1 87 179 - -
Gabi4472g00005 555 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Gabi4472g00005 555 CDD STKc_CAMK 93 353 - -
Gabi4472g00005 555 Gene3D - 395 464 - -
Gabi4472g00005 555 FunFam CDPK-related kinase 1 87 179 - -
Gabi4472g00005 555 MobiDBLite consensus disorder prediction 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00005 Gabi-Chr4472 65965 71309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00005 1 548 EF-hand Containing Proteins AT2G17890 76.335 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4472g00005 Pkinase 4.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00005 K13412 - gmx:100817249 965.296