Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00003 ATGCTCTCCTCAGTTTCCTTTCCTGCGTCTCTCTCAGCCACTAGCCTCACCGGCAACGCCGTGGCTTCACCGCCGTGCCGAGTGAGATCCCGGCCAATAGTCGCCTTCGCCACTGCCACTGCCACTGCCACCGCAACCGCCGATGCTCGTTCTACCTGGACGGAGCAACCGAGGCCTTCGTATCTGAACTCCTCGTGCTCTTCGCTCTACGATATTCTAGGCATCCCCGCCGGCGCCTCCAACCAGGAGATCAAGGCGGCGTATCGGCGTCTAGCCAGGCTCTGCCACCCGGACGTGGCGGCGATCGACCGGAAGAACACATCAGCTGACGATTTCATGAAGATCCACGCCGCGTACTCTACCCTGTCGGATCCAGACAAGCGCGCCAATTACGACCGCAGCCTCTTCCGGCGACAACGGCCGTTGTCGACGGCATCGATGTTTTCCGGCTATACGAGTCGGAACTGGGAAACGGACCAGTGCTGGTAG 489 0.6094 MLSSVSFPASLSATSLTGNAVASPPCRVRSRPIVAFATATATATATADARSTWTEQPRPSYLNSSCSSLYDILGIPAGASNQEIKAAYRRLARLCHPDVAAIDRKNTSADDFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSTASMFSGYTSRNWETDQCW 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00003 162 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 18 162 - -
Gabi4472g00003 162 Pfam DnaJ domain 69 132 IPR001623 -
Gabi4472g00003 162 SUPERFAMILY Chaperone J-domain 65 141 IPR036869 -
Gabi4472g00003 162 CDD DnaJ 70 124 IPR001623 -
Gabi4472g00003 162 Gene3D DnaJ domain 59 154 IPR036869 -
Gabi4472g00003 162 PRINTS DnaJ domain signature 70 88 IPR001623 -
Gabi4472g00003 162 PRINTS DnaJ domain signature 107 127 IPR001623 -
Gabi4472g00003 162 PRINTS DnaJ domain signature 88 103 IPR001623 -
Gabi4472g00003 162 ProSiteProfiles dnaJ domain profile. 68 135 IPR001623 -
Gabi4472g00003 162 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Gabi4472g00003 162 SMART dnaj_3 67 127 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00003 Gabi-Chr4472 35602 36518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00003 70 132 C2H2 Transcription Factor Family AT1G74250 41.791 1.13e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00003 - - gmx:100800959 279.256