Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4472g00002 ATGCTCTCCTCCTTGTCCTTTCCCGCGTCTCTCTCCGCCGCTAACCTCACCGGCAACGCCGTGGCTCCACCACCGTGCCGCGTGAGATCCCGGCCAATAGTCGCCTTTGCCACCGCCACTGCCACCGCAACCGCCGATGCTCGTTCTACCTGGACGGAGCAACCGAGGCCTTCGTATCTGAACTCCTCTTGCTCTTCTCTCTACGATGTTCTAGGCATCCCCGCCGGCGCCTCCAACCAGGAGATCAAGGCGGCGTACCGGCGAATGGCCAGGCTCTGCCACCCTGACGTGGTGGCGATCGACCGGAAGAACACATCAGCGGACGATTTCATGAAGATCCACGCCGCGTACTCTACCCTGTCAGATCCAGACAAGCGTGCCAATTACGACCGGAGCCTCTTCCGGCGACAACGGCCGTTGTCGACGGCGTCGATGTTTTCCGGCTATACGAGTCGGAACTGGGAAACGGACCAGTGCTGGTAG 483 0.6128 MLSSLSFPASLSAANLTGNAVAPPPCRVRSRPIVAFATATATATADARSTWTEQPRPSYLNSSCSSLYDVLGIPAGASNQEIKAAYRRMARLCHPDVVAIDRKNTSADDFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSTASMFSGYTSRNWETDQCW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4472g00002 160 Pfam DnaJ domain 67 130 IPR001623 -
Gabi4472g00002 160 PRINTS DnaJ domain signature 105 125 IPR001623 -
Gabi4472g00002 160 PRINTS DnaJ domain signature 68 86 IPR001623 -
Gabi4472g00002 160 PRINTS DnaJ domain signature 86 101 IPR001623 -
Gabi4472g00002 160 SMART dnaj_3 65 125 IPR001623 -
Gabi4472g00002 160 SUPERFAMILY Chaperone J-domain 63 139 IPR036869 -
Gabi4472g00002 160 CDD DnaJ 68 122 IPR001623 -
Gabi4472g00002 160 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Gabi4472g00002 160 ProSiteProfiles dnaJ domain profile. 66 133 IPR001623 -
Gabi4472g00002 160 Gene3D DnaJ domain 57 152 IPR036869 -
Gabi4472g00002 160 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 20 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4472g00002 Gabi-Chr4472 17923 18545 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4472g00002 68 130 C2H2 Transcription Factor Family AT1G74250 40.909 2.96e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4472g00002 - - gmx:100800959 271.166