Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00077 ATGGGAATTTCGTGGAGTAACAGTAACAGTAACAGTAACAGAAGAAGAAACAGTTACCTTGACCATCCACATCTTCCACCTCCTTACTATTACTCTCATTCTCATCCTCATCCGCCGCCACTCCTGCCACCGCCTCCGCCTCAAGGTTACTTTTTTACCCCTTCTACCACTAGCTACGTGGCACCTTCTCCTTCCAATTCCATGCCCTTTTATGCAAATCAGTGTCACCCTCCTCCTCCTCCTCTTCCTCCTCCGCCGCCCTACGTTGATCATCAAAGCGCTAAGAAGATAAGGAACGATGTCAACTTGCACAAACATACTCTCCAACTCCACCTCGATCGCAACAATCCCGATCACCACTTGATTTCCTTTGTTTTCGATGCCCATTTTGATGGCAGCATAACTATCTTGTACTTGGCCAAAGAAGAAGAAAAATGTAGGTTCATTCCACTATTCCCCGATGCATTTGAGCCTATCACATTCCCCTTTCACAAAGGGCTTGGCCAGAAATTTTGTCAGCCTTCTGGAACAGGCATTGACCTAGGTTTCTTTGAGCTGGATGATCTTTCAAATCCCTCTCCTGGAGAAGATGTGTATCCCCTTGTAATATGTGCTGAAACTAGTTTGAGAACTCCTTTGGCAGATGAAACTCTTGGTGATTCCATGTTGAATGCATCCCCTCACATGCAAGTAACTCAAGCTGTCTTGGAGAAAGCCAATGATAATGGTCCTTTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTGAGAGAGTTATATGGAATAGGAAGTTCAACAGCGACAGATTTTGATGATAATGATCCTGGGAAGGAGTGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCCTTCCTTGCCGGCATATGTGTATGTGCAGTGACTGTGCAAAAGCTTTGCGGTTTCAGTCGAATAAATGCCCTATATGCCGTCAACCTATCGAGGAACTTATAGAGATCAAGATAAACAATGACGACCAATGA 1026 0.4464 MGISWSNSNSNSNRRRNSYLDHPHLPPPYYYSHSHPHPPPLLPPPPPQGYFFTPSTTSYVAPSPSNSMPFYANQCHPPPPPLPPPPPYVDHQSAKKIRNDVNLHKHTLQLHLDRNNPDHHLISFVFDAHFDGSITILYLAKEEEKCRFIPLFPDAFEPITFPFHKGLGQKFCQPSGTGIDLGFFELDDLSNPSPGEDVYPLVICAETSLRTPLADETLGDSMLNASPHMQVTQAVLEKANDNGPFQVKVVRQILWIDDVRYELRELYGIGSSTATDFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSDCAKALRFQSNKCPICRQPIEELIEIKINNDDQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00077 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 335 IPR013083 -
Gabi4470g00077 341 MobiDBLite consensus disorder prediction 29 48 - -
Gabi4470g00077 341 SMART ring_2 286 324 IPR001841 -
Gabi4470g00077 341 MobiDBLite consensus disorder prediction 1 16 - -
Gabi4470g00077 341 Pfam Zinc finger, C3HC4 type (RING finger) 284 330 - -
Gabi4470g00077 341 SUPERFAMILY RING/U-box 285 331 - -
Gabi4470g00077 341 ProSiteProfiles Zinc finger RING-type profile. 286 325 IPR001841 -
Gabi4470g00077 341 PANTHER MAHOGUNIN 1 335 IPR045194 GO:0061630
Gabi4470g00077 341 FunFam probable E3 ubiquitin-protein ligase LOG2 270 335 - -
Gabi4470g00077 341 CDD mRING-HC-C3HC5_MGRN1-like 284 325 IPR045195 -
Gabi4470g00077 341 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00077 Gabi-Chr4470 608610 610772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00077 88 341 C3H Transcription Factor Family AT3G06140 63.137 3.10e-108 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4470g00077 - - gmx:102665712 471.47