Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00063 ATGGCAAATTTCACCTCCTCTTCTCCTCCTCCTTCTCCATCTCTACCACACATTTCAGCTCCGTCATCTTCTGCGCCTTTCGACGACAGTTCCGAGGACGCCTGCAGCATATGCCTAGAGCCCTTCAGCACTGATGATCCCGCCACCATTACCAGTTGCAGACATGAATATCATCTACATTGTATTCTTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAGTTACTTGTCATGAAAGACTCTGCCAGCCAAGAGCTTCTAACTGCTGTGGAGGCTGAAAGACGCTTAAGATCAAGAGATGTTTATTCATATCCATTCACTAATTCTCGTAGCTCCCTTGAACGGCTTAATGATGACCATGGTGATTCTAGTTCAGATTACTCTCACTTCGATGAACAACTTATGCAGCACCGAGTTGCTGCTGCAAATAGAGCTCATTATGTCACCACGCGGGAAAGGCAGAGATCTTCTGGAACAGGTTCATCAGAATTTATTGCTTTTAACTCTTCTGTGCATGCTTCTGGGATGCATTCGATACTTACAACTTCACCATCTGAGGGTAGTTCACCAAGTTCTGGTGTAGCATCTGCTGCTGACTTCCAACCTCCACCATCTGCTTTTTTCCCTGTTAACATGGTTGCAGGAAATATTACTTCTGAGAGTGATGCCCCTTTCAAACCCAGAGTTCTCTACGGCCTGCCACCACCTGAGAGTGCCAGGAGACTAAACACTTCTGAGATGTTGTCCTTACCCGAGTCCATCAAATCCAAACTTTCTGCTGCTTCAGCGAGGTATAAGGAATCAATCTCAAAAAGTACCCGCGGTCTTAAAGAGAAGTTAATTGCTCGTAATGCCTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATCGCTGGTGTTACACGAATGATTGAACGCCTTGATCTTACCTCAAAACGTTCCACATCTCCTCTCATCCCTGTCTCTACTCATGGGGGGACTTCAAGCTTCCCTATGGAAGGAAAGTTTGTCCAAGAGAATGGTATTGGGCAGTTTTTTACTGAAGAGAGTGGAGTTGTGGTTCGTGATGTTAGTTCAGAAGCTCCTTCTCCCGTTTGTAGCTTGGTTGCTAATGGAGTGGAAATTCATCCTTCCTGTGTTCAGAGTGGACATGATGCTGAGAAGACTAAGCACGGATGGTCAAATCCACCACGCAGGCAGTCTCAGTAA 1233 0.459 MANFTSSSPPPSPSLPHISAPSSSAPFDDSSEDACSICLEPFSTDDPATITSCRHEYHLHCILEWSQRSKECPICWQLLVMKDSASQELLTAVEAERRLRSRDVYSYPFTNSRSSLERLNDDHGDSSSDYSHFDEQLMQHRVAAANRAHYVTTRERQRSSGTGSSEFIAFNSSVHASGMHSILTTSPSEGSSPSSGVASAADFQPPPSAFFPVNMVAGNITSESDAPFKPRVLYGLPPPESARRLNTSEMLSLPESIKSKLSAASARYKESISKSTRGLKEKLIARNASVKELSKGVQREMNAGIAGVTRMIERLDLTSKRSTSPLIPVSTHGGTSSFPMEGKFVQENGIGQFFTEESGVVVRDVSSEAPSPVCSLVANGVEIHPSCVQSGHDAEKTKHGWSNPPRRQSQ 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00063 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 93 IPR013083 -
Gabi4470g00063 410 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Gabi4470g00063 410 FunFam E3 ubiquitin-protein ligase RHF1A 20 87 - -
Gabi4470g00063 410 SUPERFAMILY RING/U-box 28 82 - -
Gabi4470g00063 410 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 25 83 - -
Gabi4470g00063 410 MobiDBLite consensus disorder prediction 388 410 - -
Gabi4470g00063 410 SMART ring_2 35 75 IPR001841 -
Gabi4470g00063 410 MobiDBLite consensus disorder prediction 181 200 - -
Gabi4470g00063 410 MobiDBLite consensus disorder prediction 1 28 - -
Gabi4470g00063 410 Pfam Ring finger domain 34 75 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00063 Gabi-Chr4470 488937 492535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00063 29 83 C3H Transcription Factor Family AT4G00335 47.273 2.57e-13 66.6