Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00061 ATGGACACTCAAATTCTCTCGGCCTCGAGTCTTGCTACTTTGCGTGTTCTGTCACCTGAAAACCCAACTCGAGCTTGCTATATTCCTCATTTACATAACCATTTTCTCAGACTCTTATCTTTCACTAACCTCAACCGCATATCCAAGTCCAGAACACCACAAGCCATTGTAAATCCTTCTCCCATTACTCATACAGTGACCACTCCCAATCCCACTCTCAGAGAAATATGCCAATCTCATGTTCCCGACCATGTATTGCAAAGGATGGAAGAGATTGGATATGTCATGCCTACAGATATCCAAAGGCAAGCATTGCCTTATCTTTTTTCTGGGCGTGACTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTTACATACCTGCTTTTGATCTATTCCATCATCAACACTGGAAAATCTTCTGTGCAAGCACTGGTCTTGGTGCCCACCCGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAACTGGAGTTGAGGGGGAGCAGAAGTCATATACCATCATGGCTTTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCGACAGTTGGGAGTTTATGCCAAATGCTTGAAAAACAAATTTTTTTGCTTGAAACTGTGCCAGTGCTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAAACGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAAACGATTTCTTCATGACTCTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGTGCAGTAGAACCCATGCCATCTCGCCTATATCATAGATTTATAATGTGTGATACCAAAAGAAAACTACAAACCCTGTTATCCTTGATACAATCCGATGCACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGAAATGCTCCATCTACATCCCTTGTGATTGACTTTCTGAAGACATCATATCAAGGTTCATTAGATATCCTCCTTCTCGAGGATGACATGAATTTCAATGCAAGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTCCTAGTGGCGACAGATATAGCTGCCCGAGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCTAGAACTGCCATAGATTATCTTCACCGAGCAGGGAGGACTTGTAGAAAACCCTTCTCTGACATGAGATGTACTGTTACCAGCATTATAGTTCCAGAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTCAACTGTGATGAGCTTATTCCATAG 1422 0.4297 MDTQILSASSLATLRVLSPENPTRACYIPHLHNHFLRLLSFTNLNRISKSRTPQAIVNPSPITHTVTTPNPTLREICQSHVPDHVLQRMEEIGYVMPTDIQRQALPYLFSGRDCILHAQTGSGKTLTYLLLIYSIINTGKSSVQALVLVPTRELGMQVTKVARMLAAKPTGVEGEQKSYTIMALLDGGTLRRHKSWLKAEPPTVVVATVGSLCQMLEKQIFLLETVPVLVVDEVDFIFNSSKQVSSLRKILTSYSSCNKRQTVFASASIPQHKRFLHDSVQQKWTKSDVVHIHVSAVEPMPSRLYHRFIMCDTKRKLQTLLSLIQSDAPESGIIFVGEQSEKSKKAGNAPSTSLVIDFLKTSYQGSLDILLLEDDMNFNARAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDMRCTVTSIIVPEERFVLQRYENELMFNCDELIP 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00061 473 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 287 IPR014001 -
Gabi4470g00061 473 CDD SF2_C_DEAD 306 435 - -
Gabi4470g00061 473 Gene3D - 301 471 IPR027417 -
Gabi4470g00061 473 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 69 464 - -
Gabi4470g00061 473 Pfam DEAD/DEAH box helicase 98 271 IPR011545 GO:0003676|GO:0005524
Gabi4470g00061 473 Pfam Helicase conserved C-terminal domain 316 435 IPR001650 -
Gabi4470g00061 473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 316 473 IPR001650 -
Gabi4470g00061 473 Gene3D - 42 285 IPR027417 -
Gabi4470g00061 473 SMART helicmild6 353 437 IPR001650 -
Gabi4470g00061 473 SMART ultradead3 93 308 IPR014001 -
Gabi4470g00061 473 CDD DEADc 85 278 - -
Gabi4470g00061 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00061 Gabi-Chr4470 479983 485557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00061 75 462 Eukaryotic Initiation Factors Gene Family AT1G72730 27.901 3.23e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4470g00061 - - gmx:100786205 761.14