Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00047 ATGATGCAGCCTGGACCTGGCATGGCTCCACCAACCATGGCTCAACAACCCAACCAGCAATACCAGCAGCAACAGCAGCAACCTTACATGATGATGCCGCCGCAACCTCAGCCACCGCAGATGTGGGCGCAATCGGCGCAGCCTCCGCCGCAATCGGTGGCTCCTCCTCAACAGGTTCAGCCAACCAGCGCCGATGAGGTTCGTACTCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATCTCTACACCTGTTTCGCTCACACGGGCGAGGTGGCCTCTGTTAAAGTCATTCGGAATAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTACTACTCGTGCAGCTGCTGAGAGAATACTTCAAACATATAATGGTACCATCATGCCAAATGGCGGACAGAACTTCAGATTGAACTGGGCAACTTTTAGTGCGGGAGAGAGGCGTCATGATGATTCTCCTGATTACACCGTTTTTGTTGGAGACTTGGCTGCAGATGTTACAGATTATCTTCTGACAGAGACATTTAGAGTTCGGTATTCTTCTGTTAAGGGGGCCAAAGTTGTTATTGATAGGACCACCGGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGAGTGAACAAGTTAGAGCTATGACTGAGATGCAGGGGGTTCTTTGTTCAACAAGACCCATGCGTATCGGGCCAGCCTCTAATAAGAACCCTGGCATTCAGCCAAAAGCATCATATCAGAATCCTCAAGGAGCACAGAACGAGAATGATCCAAATAATACAACCATTTTTGTCGGCAATTTGGATCCTAATGTTACGGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGTGAGTTGGCTCATGTAAAGATTCCGGCAGGCAAGAGATGTGGGTTTGTCCAATTTGCGGACAGGAGCTGTGCGGAAGAGGCACTGCGGGTTTTAAATGGTACACTTTTAGGTGGACAAAATGTTCGGCTTTCATGGGGCAGAAGTCCTTCAAACAAACAGACTCAAGCAGATCCAAATCAGTGGAATGGTAGTGGTGGTGGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTACTGGACAGGACCCCAATATGTATGGCGGTTATCCTGGCTATGCAAATTACCAACCTCCTCAGCAACAGCAGCAAATGGGATATAGTTGA 1209 0.4731 MMQPGPGMAPPTMAQQPNQQYQQQQQQPYMMMPPQPQPPQMWAQSAQPPPQSVAPPQQVQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTTRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTVFVGDLAADVTDYLLTETFRVRYSSVKGAKVVIDRTTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGIQPKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELAHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQADPNQWNGSGGGGYYGYAQGYENYGYAPTGQDPNMYGGYPGYANYQPPQQQQQMGYS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00047 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Gabi4470g00047 402 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 342 - -
Gabi4470g00047 402 FunFam Polyadenylate-binding protein RBP45C 245 373 - -
Gabi4470g00047 402 MobiDBLite consensus disorder prediction 31 56 - -
Gabi4470g00047 402 MobiDBLite consensus disorder prediction 12 30 - -
Gabi4470g00047 402 FunFam Polyadenylate-binding protein RBP45 10 152 - -
Gabi4470g00047 402 SUPERFAMILY RNA-binding domain, RBD 156 253 IPR035979 GO:0003676
Gabi4470g00047 402 SUPERFAMILY RNA-binding domain, RBD 29 149 IPR035979 GO:0003676
Gabi4470g00047 402 MobiDBLite consensus disorder prediction 382 402 - -
Gabi4470g00047 402 CDD RRM1_SECp43_like 69 149 - -
Gabi4470g00047 402 CDD RRM2_SECp43_like 160 239 - -
Gabi4470g00047 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Gabi4470g00047 402 SMART rrm1_1 267 334 IPR000504 GO:0003723
Gabi4470g00047 402 SMART rrm1_1 69 144 IPR000504 GO:0003723
Gabi4470g00047 402 SMART rrm1_1 162 236 IPR000504 GO:0003723
Gabi4470g00047 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Gabi4470g00047 402 MobiDBLite consensus disorder prediction 243 266 - -
Gabi4470g00047 402 MobiDBLite consensus disorder prediction 1 63 - -
Gabi4470g00047 402 Gene3D - 8 151 IPR012677 -
Gabi4470g00047 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Gabi4470g00047 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
Gabi4470g00047 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Gabi4470g00047 402 MobiDBLite consensus disorder prediction 232 266 - -
Gabi4470g00047 402 SUPERFAMILY RNA-binding domain, RBD 251 368 IPR035979 GO:0003676
Gabi4470g00047 402 Gene3D - 152 246 IPR012677 -
Gabi4470g00047 402 Gene3D - 247 373 IPR012677 -
Gabi4470g00047 402 FunFam Polyadenylate-binding protein RBP45C 153 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00047 Gabi-Chr4470 350694 354725 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00047 69 345 Eukaryotic Initiation Factors Gene Family AT4G34110 27.305 8.21e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4470g00047 - - gmx:100796848 604.364