Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00046 ATGATGCAGCCTGGACCTGGCATGGCTCCACCAACCATGGCTCAACAACCCAACCAGCAATACCAGCAGCAACAGCAGCAACCTTACATGATGATGCCGCCGCAACCTCAGCCACCGCAGATGTGGGCGCAATCGGCGCAGCCTCCGCCGCAATCGGTGGCTCCTCCTCAACAGGTTCAGCCAACCAGCGCCGATGAGGTTCGTACTCTTTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATCTCTACACCTGTTTCGCTCACACGGGCGAGGTGGCCTCTGTTAAAGTCATTCGGAATAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTACTACTCGTGCAGCTGCTGAGAGAATACTTCAAACATATAATGGTACCATCATGCCAAATGGCGGACAGAACTTCAGATTGAACTGGGCAACTTTTAGTGCGGGAGAGAGGCGTCATGATGATTCTCCTGATTACACCGTTTTTGTTGGAGACTTGGCTGCAGATGTTACAGATTATCTTCTGACAGAGACATTTAGAGTTCGGTATTCTTCTGTTAAGGGGGCCAAAGTTGTTATTGATAGGACCACCGGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGCAGATGAGAGTGAACAAGTTAGAGCTATGACTGAGATGCAGGGGGTTCTTTGTTCAACAAGACCCATGCGTATCGGGCCAGCCTCTAATAAGAACCCTGGCATTCAGCCAAAAGCATCATATCAGAATCCTCAAGGAGCACAGAACGAGAATGATCCAAATAATACAACCATTTTTGTCGGCAATTTGGATCCTAATGTTACGGATGATCATTTGAGACAAGTTTTTGGGCAGTATGGTGAGTTGGCTCATGTAAAGATTCCGGCAGGCAAGAGATGTGGGTTTGTCCAATTTGCGGACAGGAGCTGTGCGGAAGAGGCACTGCGGGTTTTAAATGGTACACTTTTAGGTGGACAAAATGTTCGGCTTTCATGGGGCAGAAGTCCTTCAAACAAACAGGTAATAGTTACTGATTCAGATCCAAATCAGTGGAATGGTAGTGGTGGTGGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTACTGGACAGGACCCCAATATGTATGGCGGTTATCCTGGCTATGCAAATTACCAACCTCCTCAGCAACAGCAGCAAATGGGATATAGTTGA 1218 0.4704 MMQPGPGMAPPTMAQQPNQQYQQQQQQPYMMMPPQPQPPQMWAQSAQPPPQSVAPPQQVQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTTRAAAERILQTYNGTIMPNGGQNFRLNWATFSAGERRHDDSPDYTVFVGDLAADVTDYLLTETFRVRYSSVKGAKVVIDRTTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKNPGIQPKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELAHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQVIVTDSDPNQWNGSGGGGYYGYAQGYENYGYAPTGQDPNMYGGYPGYANYQPPQQQQQMGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00046 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
Gabi4470g00046 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 57 342 - -
Gabi4470g00046 405 Gene3D - 153 247 IPR012677 -
Gabi4470g00046 405 MobiDBLite consensus disorder prediction 243 265 - -
Gabi4470g00046 405 FunFam Polyadenylate-binding protein RBP45 10 152 - -
Gabi4470g00046 405 FunFam Polyadenylate-binding protein RBP45C 245 376 - -
Gabi4470g00046 405 Gene3D - 8 152 IPR012677 -
Gabi4470g00046 405 MobiDBLite consensus disorder prediction 12 30 - -
Gabi4470g00046 405 MobiDBLite consensus disorder prediction 31 56 - -
Gabi4470g00046 405 SUPERFAMILY RNA-binding domain, RBD 250 366 IPR035979 GO:0003676
Gabi4470g00046 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 226 IPR000504 GO:0003723
Gabi4470g00046 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
Gabi4470g00046 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Gabi4470g00046 405 CDD RRM1_SECp43_like 69 149 - -
Gabi4470g00046 405 CDD RRM2_SECp43_like 160 239 - -
Gabi4470g00046 405 SUPERFAMILY RNA-binding domain, RBD 155 256 IPR035979 GO:0003676
Gabi4470g00046 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Gabi4470g00046 405 SMART rrm1_1 267 334 IPR000504 GO:0003723
Gabi4470g00046 405 SMART rrm1_1 69 144 IPR000504 GO:0003723
Gabi4470g00046 405 SMART rrm1_1 162 236 IPR000504 GO:0003723
Gabi4470g00046 405 MobiDBLite consensus disorder prediction 232 265 - -
Gabi4470g00046 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 240 IPR000504 GO:0003723
Gabi4470g00046 405 MobiDBLite consensus disorder prediction 1 63 - -
Gabi4470g00046 405 Gene3D - 248 345 IPR012677 -
Gabi4470g00046 405 SUPERFAMILY RNA-binding domain, RBD 29 149 IPR035979 GO:0003676
Gabi4470g00046 405 MobiDBLite consensus disorder prediction 386 405 - -
Gabi4470g00046 405 FunFam Polyadenylate-binding protein RBP45C 153 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00046 Gabi-Chr4470 350694 354732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00046 162 331 Eukaryotic Initiation Factors Gene Family AT4G34110 29.714 7.29e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4470g00046 - - gmx:100796848 597.045