Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00038 ATGGGTTGTCATGGTAGCAAGGAAAAAAAATCAAGGGCAGAAGTAACAATACTGGGAAAACCCTTTGAAGATATAAAGAAGCACTACACATTGGGGAAAGAATTGGGTAGAGGGCAATTTGGGATTACGTATCTGTGCACTGAGAATTCCACCGGGCTCACTTATGCTTGCAAATCCATTTTGAAGAGGAAACTTGTTTCCAAAGCTGACAAAGAAGACATGAAGAGAGAGATTCATATTATGCAGCATTTGTCAGGGCAACCCAACATTGTAGAATTCAAGGGTGCTTATGAGGATAGGTATTCGGTGCACCTTGTGATGGAACTCTGTGCTGGTGGAGAGCTCTTCGATCGAATCATTGCTCAGGGTCACTATTCAGAGAGTGCAGCTGCATCTATTTGCAGAGCCATTGTTAATGTTGTGCACATTTGCCATTTCATGGGTGTCATGCATCGCGATCTAAAGCCTGAGAATTTCTTGCTTTCTAGCAAGGATGAGGGAGCAACGATCAAGGCAACTGATTTTGGACTTTCTGTATTCATTGAAGAAGGGAAGGTTTACCGTGATATGGTGGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATGTTGTATATTCTCCTGAGTGGTGTACCACCTTTTTGGGCCGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAAATTGACTTTGTAAGTGAACCATGGCCATCAATATCAGACAGTGCTAAAGATCTAGTCAGGAAAATGCTAATACAGGATCCAAAGAAGCGGATTACTTCTGCGCAAGTCCTTGAACACCCATGGATGAGAGAAGGCGGAGAGGCATCTGATAAACCGATTGATAGTGCAGTTTTATCTAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTTGCGTTGAAGGTTATTGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTTGCAAATATGGACACTGACAATAGTGGCACTATCACCTATGAAGAATTGAAGACAGGCTTGGCTCGAATCGGATCGCGACTATCTGAGGCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATATTGAATTCATATCAGCTACAATGCATAGGCACAGACTTGAACGGGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGCCATATTACTAGAGATGAATTGGAGACTGCTATGACACAGCATGGAATGGGGGATGAAGCAACAATAAAGGAAATAATTTCTGAGGTGGATACAGATAATGATGGAAGAATAAACTATGAGGAGTTCTGTGCAATGATGAGAAGCGGAATGCCACCAGGGACAACTACTTTAAATCTACTGAATGCAATCAATTTTACAATCTCGTGTGATTCATCATGA 1479 0.4138 MGCHGSKEKKSRAEVTILGKPFEDIKKHYTLGKELGRGQFGITYLCTENSTGLTYACKSILKRKLVSKADKEDMKREIHIMQHLSGQPNIVEFKGAYEDRYSVHLVMELCAGGELFDRIIAQGHYSESAAASICRAIVNVVHICHFMGVMHRDLKPENFLLSSKDEGATIKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIMLYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISDSAKDLVRKMLIQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSRLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLYKAFQYFDKDNSGHITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPXPGTTTLNLLNAINFTISCDSS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00038 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 462 - -
Gabi4470g00038 493 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Gabi4470g00038 493 SMART efh_1 441 469 IPR002048 GO:0005509
Gabi4470g00038 493 SMART efh_1 406 434 IPR002048 GO:0005509
Gabi4470g00038 493 SMART efh_1 334 362 IPR002048 GO:0005509
Gabi4470g00038 493 SMART efh_1 370 398 IPR002048 GO:0005509
Gabi4470g00038 493 SMART serkin_6 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4470g00038 493 ProSiteProfiles Protein kinase domain profile. 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4470g00038 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Gabi4470g00038 493 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Gabi4470g00038 493 SUPERFAMILY EF-hand 326 466 IPR011992 -
Gabi4470g00038 493 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Gabi4470g00038 493 FunFam Calcium-dependent protein kinase 1 31 114 - -
Gabi4470g00038 493 Gene3D - 295 468 - -
Gabi4470g00038 493 FunFam Calcium-dependent protein kinase 1 295 470 - -
Gabi4470g00038 493 FunFam calcium-dependent protein kinase 1 115 294 - -
Gabi4470g00038 493 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Gabi4470g00038 493 ProSitePatterns EF-hand calcium-binding domain. 343 355 IPR018247 -
Gabi4470g00038 493 CDD STKc_CAMK 28 286 - -
Gabi4470g00038 493 SUPERFAMILY Protein kinase-like (PK-like) 26 288 IPR011009 -
Gabi4470g00038 493 Gene3D Phosphorylase Kinase; domain 1 31 114 - -
Gabi4470g00038 493 ProSitePatterns EF-hand calcium-binding domain. 450 462 IPR018247 -
Gabi4470g00038 493 ProSiteProfiles EF-hand calcium-binding domain profile. 330 365 IPR002048 GO:0005509
Gabi4470g00038 493 ProSiteProfiles EF-hand calcium-binding domain profile. 438 472 IPR002048 GO:0005509
Gabi4470g00038 493 Pfam Protein kinase domain 29 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4470g00038 493 Gene3D Transferase(Phosphotransferase) domain 1 115 294 - -
Gabi4470g00038 493 ProSitePatterns Protein kinases ATP-binding region signature. 35 62 IPR017441 GO:0005524
Gabi4470g00038 493 Pfam EF-hand domain pair 335 395 IPR002048 GO:0005509
Gabi4470g00038 493 Pfam EF-hand domain pair 405 467 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00038 Gabi-Chr4470 283638 288490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00038 16 473 EF-hand Containing Proteins AT4G04720 85.153 0.0 824
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4470g00038 Pkinase 5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4470g00038 K13412 - gmx:100816859 872.463