LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4470g00005	ATGTTAGAATTTCCAGTCAACCTTAGCGGCGCCACCACTGCTTCCTCGCCTCCCTCCGATCATCACAATCGGACGGTCGCCAGTGAAGTCGACTTCTTCTCTGTTGGAAACAAATCGTCACCGCCACCCCATCATGTCGACGTCACCGACATCAACCAAGATATATCTCGTGTTGAAACCCCTTCCAAATGTAATCTCCACGTAAACACCGGTTTACAACTCCTTACTGCTAATACCGGGAGTGATCGATCAATGGTGGATGATGGGGCTTCATCGGATGTTGAAGATAAGCTTGTCAAGATTAGGGAGCATGCACAATTGCAAGAGGACCTTCAACACTTGAACAATGAAAACCAAAAGTTGAAGGAGATGCTCGACCATGCGAGCAGTAAGTACACGAACTTGCAAAATCTTGTGGTATCAATGAAACAGCAGAAGAACCAAAGTGCCGAGGGCACAGAAAATGAGGTTGTTCATCAAGGAAAAGCTGAGGATAAAAACCATGGGGTAGGTGGAGGAATGGTACCTAGACAGTTCCTCGGTTTAGGTCGTAGTTGCACAGCGGAAGTAGATGATCAAGTATCTAATTCTTCTTCGGATGAAAGAAATCGAACAAACACAAATCAGAACAATAAAAACGAGAAGGATAAGAAAGAGACTGGTCCAGACTCAGAATCACAAGGTTGGGACCCGGATAAGCTTCGTAAATTGAACCCCACAAACGCCACGGATCCATTCACTACCGAAGCTACAATGAGAAAAGCTCGAGTCTCAGTCCGTGCCCGATCAGAAGCACTCACGATCAGTGATGGATGCCAATGGCGAAAATATGGACAAAAAATGGCTAAGGGAAACCCTTGTCCTCGAGCATATTACAGATGTACTATGGCACTTGGTTGCCCAGTTCGCAAACAAGTACAACGTTGTGCGGATGACAGAACAATTTTGACAACGACTTATGAAGGCACACATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCGACCACTGCAGCTGCTGCTACCATGTTGCTGTCTGGTTCAATGTCCAGTGCTGATGGGATGATCATGAATCCCAATTTGCTAGCAAGATCTATTCTTCCTTGCTCTTCTTCTAGCAGCATGGTAACACTTTCAGCTTCAGCACCATTCCCTACTGTGACATTAGACCTTACACACAACCCAAACAACGCATTGCATTACCAAAGACCTCCTTCGAATTCCCCGTTCCAATTGCCGCAGGTGATTGCACGAGCGCTCTATAACCAATCCAAATTCTCTGGCCTTCAGAACGTGGGGTCTTCCCAATTGGCTCCAACAGTCAGTGCCGCCACCGCAGCCATCACCGCCGACCCTAACTTCACGGCAGCACTCGCAGCCGCCATCTCATCCATCATCGGCGGTGCTCATCCAAATGACAACGCCAGCAACAGCCGTAATCCCAATATCATCAACAGTGCTTCAATCAATAGCTTTTCAGGAAACTAA	1494	0.4732	MLEFPVNLSGATTASSPPSDHHNRTVASEVDFFSVGNKSSPPPHHVDVTDINQDISRVETPSKCNLHVNTGLQLLTANTGSDRSMVDDGASSDVEDKLVKIREHAQLQEDLQHLNNENQKLKEMLDHASSKYTNLQNLVVSMKQQKNQSAEGTENEVVHQGKAEDKNHGVGGGMVPRQFLGLGRSCTAEVDDQVSNSSSDERNRTNTNQNNKNEKDKKETGPDSESQGWDPDKLRKLNPTNATDPFTTEATMRKARVSVRARSEALTISDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCADDRTILTTTYEGTHNHPLPPAAMAMASTTAAAATMLLSGSMSSADGMIMNPNLLARSILPCSSSSSMVTLSASAPFPTVTLDLTHNPNNALHYQRPPSNSPFQLPQVIARALYNQSKFSGLQNVGSSQLAPTVSAATAAITADPNFTAALAAAISSIIGGAHPNDNASNSRNPNIINSASINSFSGN	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4470g00005	497	MobiDBLite	consensus disorder prediction	190	206	-	-
	Gabi4470g00005	497	SUPERFAMILY	WRKY DNA-binding domain	261	329	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4470g00005	497	MobiDBLite	consensus disorder prediction	190	251	-	-
	Gabi4470g00005	497	MobiDBLite	consensus disorder prediction	207	232	-	-
	Gabi4470g00005	497	Pfam	WRKY DNA -binding domain	270	327	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4470g00005	497	MobiDBLite	consensus disorder prediction	8	23	-	-
	Gabi4470g00005	497	MobiDBLite	consensus disorder prediction	143	176	-	-
	Gabi4470g00005	497	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	70	480	IPR044810	GO:0003700
	Gabi4470g00005	497	Coils	Coil	97	138	-	-
	Gabi4470g00005	497	SMART	WRKY_cls	268	328	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4470g00005	497	ProSiteProfiles	WRKY domain profile.	263	329	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi4470g00005	497	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gabi4470g00005	497	FunFam	probable WRKY transcription factor 31	253	330	-	-
	Gabi4470g00005	497	MobiDBLite	consensus disorder prediction	475	497	-	-
	Gabi4470g00005	497	Gene3D	WRKY domain	253	330	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4470g00005	Gabi-Chr4470	33434	36279	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4470g00005	2	482	WRKY Transcription Factor Family	AT1G62300	51.248	1.19e-133	396

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi4470g00005		WRKY	2.3e-24	CL0274