Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00003 ATGGCCACCTCAACCCCACTCCTCTTGCTTGTATGCATCTTGCTACACCTTGCTTCAAACTTGGTTAATGCCTACTCAACAGAGAAATACTACCATACTCCCCAACCCATCTCAAAGAATATTCCCAAGAGTCCTAAGAAAGCATTCCTCAATAAGATAGACTCTTGCTGGCGGGCCAAACCAAATTGGGCATCAAATCGCAAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCATTGGAGGCAAGTATGGAGCAATATATCTAGTCACAGATCCCTCTGATGACCCTGCAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAACAGAGCCCCTTTGGATCATTTTTAAAAAGGACATGGTTATTACACTCAAGAATGAGCTTATAATGAATAGCTACAAGACTATTGATGGGAGAGGAGCTAAAGTGGAGATTGCAAATGGGCCTTGCATTACAATACAAGGTGTTAGCCATGTTATTATACATGGCATTAGCATCCATGATTGTAAACCAGGCAAGGCTGGCCTTGTGAGGAGTACTCCTGAACATGTTGGCCATCGTCAAGGCTCTGATGGAGATGCCATTAGTATATTTTCTTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTCGTTGCTTCGATGGCCTAATTGATATTATTCATGCCTCAACTGCCATTACCATTTCTAACAATTACTTTACCCAGCATGACAAAGTTATGCTGCTAGGACACAATGACCATTACACAGCAGATAAAATAATGACAGTAACAATAGCCTTTAACCGATTTGCTACTGGCCTAACAGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAATTACGATGAGTGGAAAATGTATGCTATAGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGGAACTTTTTTATGGCTCCAAATAACCCAAATGCAAAACAGGTTACCAAGAGGGAAATGAAGGAAAACTGGAAGAGTTGGAAATGGAGGTCTTCTAAGGATTTATTCCTAAATGGTGCTTATTTTGTAGCATCAGGGTATGGAAGTTGTGCCCCAAATTATTCACCTACTCAATCTTTTACTGCTGTTCCAGCGTACATGGTGCCTGCAATAACTCTCAATGCAGGTCCCTTGAGTTGTTTTGTTGGGATAGCATGTTAG 1194 0.4188 MATSTPLLLLVCILLHLASNLVNAYSTEKYYHTPQPISKNIPKSPKKAFLNKIDSCWRAKPNWASNRKALADCAIGFGKDAIGGKYGAIYLVTDPSDDPANPKPGTLRYGAIQTEPLWIIFKKDMVITLKNELIMNSYKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKAGLVRSTPEHVGHRQGSDGDAISIFSSSNIWIDHCFLARCFDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDHYTADKIMTVTIAFNRFATGLTERMPRVRFGYAHVVNNNYDEWKMYAIGGSANPTILSEGNFFMAPNNPNAKQVTKREMKENWKSWKWRSSKDLFLNGAYFVASGYGSCAPNYSPTQSFTAVPAYMVPAITLNAGPLSCFVGIAC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Gabi4470g00003 397 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Gabi4470g00003 397 Gene3D - 50 390 IPR012334 -
Gabi4470g00003 397 Pfam Pectate lyase 131 315 IPR002022 -
Gabi4470g00003 397 SMART amb_all 124 321 IPR002022 -
Gabi4470g00003 397 PANTHER PECTATE LYASE 18-RELATED 26 392 IPR045032 GO:0030570
Gabi4470g00003 397 SUPERFAMILY Pectin lyase-like 51 388 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00003 Gabi-Chr4470 18929 20402 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00003 10 397 Polysaccharide Lyase AT1G11920 66.071 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4470g00003 K01728 - gmx:100807483 689.878