Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4470g00002 ATGGGTACATTAACCACTTTTCTAGTGCTTTCATGTTTTCTATCTAACTTGGCTTTAACCATGAGTGCAGATTCAACAAAGGAATACAACACCGCCCTGCACCCCATTCCAAGCTATGTCCCAAAGAGTGGTAAGAATGTGCTCATGAATAAAATAGACTCATGCTGGCGAACCAAAGAAGATTGGGCTTCAAACCGGCGTGCCTTGGCTGATTGCAATATTGGCTTTGGAAAAGATTCTATTGGAGGGAAATTTGGTGCCATATACAAAGTGACTGATCCATCCGATGACCCTGTAAACCCAAAACCAGGCACACTTCGTTATGGTGCAATCCAAACACAACCCCTTTGGATAACTTTCGCCAAGGACATGGTTATCACGCTCAAGAACGAGCTTATAATGAATAGCTACAAGACCATTGATGGGAGGGGAGCAAAAGTTGAGATTACAAATGGACCTTGCATTACAATACAAGGTGTTAGCCATGTCATTATACATGGAATTAGCATTCACGATTGTAAACCAGGTGAAGCTGCTATGGTGAGGAGCACTCCTGAACATGTTGGCCATCGTCAAGGCTCTACTGGAGATGCCATTTGTATATTTGCTTCCTCCAATATCTGGATTGACCATTGCTTTTTCTCTCGTTCCGCTGATAGTCTTATTGATGTTATTCATGCATCAACTGCTGTCACTATCTCTAACAATTACTTCACCCACCATGACGAAGTGATGCTGTTAGGACACAGCGATGAATATTCCGCGGATAGAATAATGAGAGTAACAGTAGCGTTCAATCACTTTGCCAGTGGCCTCGTAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCTCATGTGGTCAACAACTACTATAATGGGTGGCTCATGTATGCCATTGGTGGTAGTGCTGATCCTACCATTTTTAGTGAAGGGAACTACTTTATAGCTTCAAATGCTACTGCTGCAAAAGAGGTTACCAAGAGGGAAAGTGGAAATTGGAATTATTGGAAATGGAGGAGTTTTCAGGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGATATGGAAGTTGTAATCCATTATATTCACCAGCTCAAACTTTTGTCGCGGCCCCGGCATCCTTGGTGCCTTCATTAACTCTCAATGCAGGTCCACTGGAGTGTGTTGTTGGAAAACCATGTTGA 1188 0.4251 MGTLTTFLVLSCFLSNLALTMSADSTKEYNTALHPIPSYVPKSGKNVLMNKIDSCWRTKEDWASNRRALADCNIGFGKDSIGGKFGAIYKVTDPSDDPVNPKPGTLRYGAIQTQPLWITFAKDMVITLKNELIMNSYKTIDGRGAKVEITNGPCITIQGVSHVIIHGISIHDCKPGEAAMVRSTPEHVGHRQGSTGDAICIFASSNIWIDHCFFSRSADSLIDVIHASTAVTISNNYFTHHDEVMLLGHSDEYSADRIMRVTVAFNHFASGLVERMPRVRFGYAHVVNNYYNGWLMYAIGGSADPTIFSEGNYFIASNATAAKEVTKRESGNWNYWKWRSFQDEFLNGAYFVPSGYGSCNPLYSPAQTFVAAPASLVPSLTLNAGPLECVVGKPC 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4470g00002 395 SMART amb_all 123 320 IPR002022 -
Gabi4470g00002 395 Pfam Pectate lyase 130 314 IPR002022 -
Gabi4470g00002 395 Gene3D - 49 388 IPR012334 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 366 389 IPR018082 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 336 360 IPR018082 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 72 89 IPR018082 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 275 294 IPR018082 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 131 147 IPR018082 -
Gabi4470g00002 395 PRINTS Pollen allergen Amb family signature 95 120 IPR018082 -
Gabi4470g00002 395 SUPERFAMILY Pectin lyase-like 49 386 IPR011050 -
Gabi4470g00002 395 PANTHER PECTATE LYASE 18-RELATED 40 393 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4470g00002 Gabi-Chr4470 12164 13648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4470g00002 11 395 Polysaccharide Lyase AT1G11920 66.667 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4470g00002 K01728 - gmx:100803229 629.787