Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4463g00002 ATGCTAAGAGAAAGTTCTTTGCAGAAACTCCCAAACAATTTCACTGGGAAATATCGTGGTGACATGCCAAACCCAATGTTTCTCAGGCCTCCAGATGGCACTGAGTGGGAAGTATTTTGGACTAAAAATGCTGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTTCTACATATTACTCTCTAGATCATGGTCATATGGTGTTGTTTGAATACAAGCACATTTCTCATTTTGATGTACGCATATGTGACAAGAGTACACTTGAAATAGATTATCCTTTCCATGGCTCTCAAGATGCACAGGATAACCTTGACCAGATTAGTGATGATGATTCAGTTAAAATTTCGGATGAGCTACCACCATGCCATAAGAATACACAGAAATCACCAATGTCTTCTCCTCAACCATGTAAGAAATCGAGAACTTGCACAAGTGGAGATGTTGAAAGAAGCTCAACTTTGCAAAACTTGCCTCAGTATGTCCAAATTGAAGGTACAAACTTGGAGAAGTCTAAATTTGCATCTGTAAAGAAAGAAGCGGATGAGGATATAGGTGGTAGTGGTACCACTGAATTTCTAAGAGTGAAGCAGTTCACTTCTAAACTTACCGAAGCTACAAACAAAGCCAAAACTTTCAGATCTAAAAGTCCCTCTTTCACGATTGTCATGAAGCCTTCCTATGTAGATGGTCAATTCTTGAATGTACCACTTGTCTTCATGAGAGAGTACTTCAATAACAACATGCAGATTGTGATGTTACAGTTTGGAAAGAAATTGTGGCCTGTAAAGTTAGTGAGTTATGCAAATAGAGATAGTGCGGGATGGAAGTTGTCTAATGGTTGGTTGCAATTTGCTCGAGAAAGTAAATTGGTAGGTGGAGATTACTGTGTGTTTGAACTCATCAACAGAGAAAATGCAGTACTTAATGTTCATATTTTCAGAGGCCACGGTTAG 954 0.3857 MLRESSLQKLPNNFTGKYRGDMPNPMFLRPPDGTEWEVFWTKNAGDIWFQKGWKEFSTYYSLDHGHMVLFEYKHISHFDVRICDKSTLEIDYPFHGSQDAQDNLDQISDDDSVKISDELPPCHKNTQKSPMSSPQPCKKSRTCTSGDVERSSTLQNLPQYVQIEGTNLEKSKFASVKKEADEDIGGSGTTEFLRVKQFTSKLTEATNKAKTFRSKSPSFTIVMKPSYVDGQFLNVPLVFMREYFNNNMQIVMLQFGKKLWPVKLVSYANRDSAGWKLSNGWLQFARESKLVGGDYCVFELINRENAVLNVHIFRGHG 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4463g00002 317 PANTHER B3 DOMAIN-CONTAINING 9 311 - -
Gabi4463g00002 317 SUPERFAMILY DNA-binding pseudobarrel domain 5 93 IPR015300 -
Gabi4463g00002 317 MobiDBLite consensus disorder prediction 112 150 - -
Gabi4463g00002 317 Gene3D - 199 316 IPR015300 -
Gabi4463g00002 317 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Gabi4463g00002 317 SUPERFAMILY DNA-binding pseudobarrel domain 213 315 IPR015300 -
Gabi4463g00002 317 CDD B3_DNA 217 314 IPR003340 GO:0003677
Gabi4463g00002 317 ProSiteProfiles B3 DNA-binding domain profile. 218 316 IPR003340 GO:0003677
Gabi4463g00002 317 Gene3D - 2 87 IPR015300 -
Gabi4463g00002 317 Pfam B3 DNA binding domain 219 315 IPR003340 GO:0003677
Gabi4463g00002 317 Pfam B3 DNA binding domain 9 85 IPR003340 GO:0003677
Gabi4463g00002 317 SMART B3_2 219 316 IPR003340 GO:0003677
Gabi4463g00002 317 SMART B3_2 1 86 IPR003340 GO:0003677
Gabi4463g00002 317 CDD B3_DNA 10 84 IPR003340 GO:0003677
Gabi4463g00002 317 MobiDBLite consensus disorder prediction 122 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4463g00002 Gabi-Chr4463 31958 34159 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4463g00002 9 314 B3 DNA Binding Superfamily AT3G18990 29.063 1.87e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4463g00002 B3 1.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4463g00002 - - lja:Lj0g3v0181669.1 285.419