Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4463g00001 ATGGATTTAACTGTGCATGCTAAGAGAAAGTTTTTTTTGCAGAAACTCCCAAACAATTTCACTAAGAAATATGGTGGTGATATGCCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAGTATTTTGGAGTAAAAAAGATGGTGATATTTGGCTTCAAAAGGGTTGGAAAGAATTTGCTACGTATTACTCACTAGATCATGGTCATATGGTGTTGTTTGAATACAAGCACACTTCTCATTTTGATGTACGCATATGTGACAAGAGTACACTTGAAATAGATTATCCTTTCCATGGCTCTCAAGATGCACAGGACAACCTTGACCAGATTAGTGATGATGACTCAGTTAAAATTTCGGATGAGCTACCACCATGCCATAAGAATAGACAGAAATCACCAATGTCTTCTCCTCAACCATGTAAGAAATTGAGAACTTGCACAAGTGGAGATGTTGAAAGAAGCTCTAGTTTGCAAAACTTGCCTCAGGGTGTCCAAATTGAAGAGGATATAGGTGGTACCACTGAATTTCTAAGAGTAAAGCAGTTCACTTCTAAAATTACTGAAGCTATAAACAAAGCCAAAACTTTCAGATCTAAAAGACCCTCTTTCACGATTGTCATGAAGCCTTCCTATGTTGATGGACAATTCTTGATTGTACCACTTGTCTTCGTGAGAGACTACTTCAATAACATGATGCAGATTGTGATGTTACAGTTTGGAAAGAAATTGTGGCCTGTAAATTTAGTGAGTTATGCATCTGCAAATAGAAATGGTGCTCGATGGAAGTTGTCTAATGGTTGGTTGCAATTTGCTCGAGAAAGTAAATTGGTAGATGGAGATTATTGTGTGTTTGAACTCATCAACAGAGAAAATGCATGGGTGGGTTTTAAGCTAACATTTGTGGCGTGTGGGTTTGATGAATTGAAGAGAAATATG 945 0.3788 MDLTVHAKRKFFLQKLPNNFTKKYGGDMPNPMFLKPPDGTEWEVFWSKKDGDIWLQKGWKEFATYYSLDHGHMVLFEYKHTSHFDVRICDKSTLEIDYPFHGSQDAQDNLDQISDDDSVKISDELPPCHKNRQKSPMSSPQPCKKLRTCTSGDVERSSSLQNLPQGVQIEEDIGGTTEFLRVKQFTSKITEAINKAKTFRSKRPSFTIVMKPSYVDGQFLIVPLVFVRDYFNNMMQIVMLQFGKKLWPVNLVSYASANRNGARWKLSNGWLQFARESKLVDGDYCVFELINRENAWVGFKLTFVACGFDELKRNM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4463g00001 315 ProSiteProfiles B3 DNA-binding domain profile. 1 92 IPR003340 GO:0003677
Gabi4463g00001 315 PANTHER B3 DOMAIN-CONTAINING 15 293 - -
Gabi4463g00001 315 MobiDBLite consensus disorder prediction 121 149 - -
Gabi4463g00001 315 ProSiteProfiles B3 DNA-binding domain profile. 205 305 IPR003340 GO:0003677
Gabi4463g00001 315 CDD B3_DNA 6 90 IPR003340 GO:0003677
Gabi4463g00001 315 Gene3D - 3 93 IPR015300 -
Gabi4463g00001 315 SMART B3_2 12 92 IPR003340 GO:0003677
Gabi4463g00001 315 SMART B3_2 206 309 IPR003340 GO:0003677
Gabi4463g00001 315 Gene3D - 186 305 IPR015300 -
Gabi4463g00001 315 Pfam B3 DNA binding domain 206 298 IPR003340 GO:0003677
Gabi4463g00001 315 Pfam B3 DNA binding domain 15 91 IPR003340 GO:0003677
Gabi4463g00001 315 CDD B3_DNA 204 293 IPR003340 GO:0003677
Gabi4463g00001 315 SUPERFAMILY DNA-binding pseudobarrel domain 10 99 IPR015300 -
Gabi4463g00001 315 MobiDBLite consensus disorder prediction 132 149 - -
Gabi4463g00001 315 SUPERFAMILY DNA-binding pseudobarrel domain 200 297 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4463g00001 Gabi-Chr4463 10313 12830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4463g00001 4 290 B3 DNA Binding Superfamily AT3G18990 28.660 1.12e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4463g00001 B3 1.5e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4463g00001 - - lja:Lj0g3v0181669.1 311.612