Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4461g00007 ATGGACGAGGGCAACGAGGATCCCAAAACGGACGGTTCGCCGGTTCAGAACGGTGAATTGGATGATGAGCGTTGCGGCAAGAAGGCCAAGGTGGATGCTGCCTCCGACGGCGGTGAATTGAAGAGAGTGGCGGAGATTGTGTTGGTTTTGTCGACGATGGCGACGGTGCGAGGTGGTAGGAAGCCCACCGATGTGGAGGTTGAGCTCATGAGGGAGGCTCGAACCAAGCTCGCCGAGCTCTGTCAGGGGCTCGCTCCGAAGGATATTGTGGCCAGGGAAGCTATTGGGACCGTGATTGAGGATCTTGGCTTGAACGCCAAGATTAAGGACCAGAGGTTAGGGTTTCGAACTCCCAAGATGTCCGTTGCCGAGAGGTATTCCCACGCTAAGTGGAAGATGGAGGAATCAAAGAAGTTTTCTACATCTCAGCCCTTGCAAACAAGCATTGGTGGAACAGTTGACAACCGTGTGCCATCACATGCTGTTCGAATGATTGCGCCTGATAAATCAATCCACACAGCAATCTCTTCCACAAGTACCATAGTGTCTATACCTGCCCATGTTTCTGCAGGATCTTCTGCAGCATTGCAATATCAATCGATCAGCAATGAAGTAAGACCACCTGTGGTTTCAGGTTTAATGCCTAGCAGTCACTTGGGGAGAAATTCATCTCCCTTAGCATTGCCTAAAGTTGAACACCCACAATTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTATGTCCTGCAAATCCAAGCAAATTTGTCTGCAAACCAACCTTTGGTGAATGCTCCAACATGGCCAATACAGGCTCAATCTCCATCTTTAGCTAGAAGTGCATCAGAAAACAAGGTGCCTGGTCATAACCCTATCAAGGTTGAAGGAACAGCTGATGTAACTATGTCAAGGGCAGGGCCACAAATAACAAATGATCAGAGCTTTAGACCGTATATTACTCAAACAGCACCTGGAAATTTGTCTAGTATGCACCAGCCAGTGCAGGGCATGAACATTGTTCAGCCTCCTTTTATTCCTAGTCATGCGGATATTGCAAAGATTGTCCAGAAATTGCTACAACCAAAGGTTCCTGACCATCCCACATGGAGTCCTCCGTCAAGGGATTATATGAATAAGGCTTTGACATGCCAGATGTGCGAGCTCTCTGTCAATGAGATTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGTTTTCACTTGAAATGCTTGCAGCCATCGGTCTTACGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTAAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAGTATGGTCGTGTCATGAGATCCTCAAACACACCACCGAAATTGCCCTCTAATACGGGTGGTATGCAACCATCTTCAGAGAAGAAAGCAGGGAGCGTAGATCCGAAGGTCAGCCCACAGAAGTTAACAACAAATGGGAGCCCTGTTCCAACTGTTTCCAGTGGAAATGACAATGTTGAGCCACCATCTGACTCAATGACCTCACCAGATGGGAAAGACATACAAGGTACCACCATTTCATCCAACATTGAACATGTTGATGAAAAGCATGATCCAAACATCTCTATGAAATCCCTTGGTGCAGCTTCCAGTCCTTCCACTTGCTTGCCAGGTGAAAGTTCTGCTGAACAAATAAATTCTGAGTCTTTGACCTGTAAGGAGACTTCAGAAACTGAGACTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAATCTTCACAAGATTTTCATGTTAATCAGACAATACCACAAGACAATGCTGTAGTATCATCAGATAAACATGTTGACATTAGTTTAATGAATCATAAACAAAGGGAATCTCATGGAGGGGAAAATTTAATTTACGATATCAAGCGTGATGATCAAGATGTTGCACTAGCAAATTTTGTTGGAAGTTCTGGAACTGATACTGAAGGTAGACAGCACTCTGCATTATCTTCAGACACCTCACATGCTGTAGAATGGATTGGTGATGTTATACAACTTGTCGAAGAGAAAAAGTTTTACGGATCTTGCTGTGTTGATGGAGTAACATATAGGCTTCATGGTCATGCTCTTTTCCCCTCCAGCCATGGCAATTTAACACCTTTTAAAATTCAGTCTATGTGGGAAGATTGCAAAACTGGGTTCAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGGAGATTTGCCAGGGAATATTGGTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTATATTAGAGGCCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAAAATGACAGACGATGTCAGCTAGGAATTGAGGCAAGTGCTAAAGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGACGAAGTCAAAAAGTTATTTCAACCTGTTACCAGTTGA 2466 0.4416 MDEGNEDPKTDGSPVQNGELDDERCGKKAKVDAASDGGELKRVAEIVLVLSTMATVRGGRKPTDVEVELMREARTKLAELCQGLAPKDIVAREAIGTVIEDLGLNAKIKDQRLGFRTPKMSVAERYSHAKWKMEESKKFSTSQPLQTSIGGTVDNRVPSHAVRMIAPDKSIHTAISSTSTIVSIPAHVSAGSSAALQYQSISNEVRPPVVSGLMPSSHLGRNSSPLALPKVEHPQFKVDGGSNGSSYVLQIQANLSANQPLVNAPTWPIQAQSPSLARSASENKVPGHNPIKVEGTADVTMSRAGPQITNDQSFRPYITQTAPGNLSSMHQPVQGMNIVQPPFIPSHADIAKIVQKLLQPKVPDHPTWSPPSRDYMNKALTCQMCELSVNEIDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGMQPSSEKKAGSVDPKVSPQKLTTNGSPVPTVSSGNDNVEPPSDSMTSPDGKDIQGTTISSNIEHVDEKHDPNISMKSLGAASSPSTCLPGESSAEQINSESLTCKETSETETLPKLSEPAKCENLQSSQDFHVNQTIPQDNAVVSSDKHVDISLMNHKQRESHGGENLIYDIKRDDQDVALANFVGSSGTDTEGRQHSALSSDTSHAVEWIGDVIQLVEEKKFYGSCCVDGVTYRLHGHALFPSSHGNLTPFKIQSMWEDCKTGFKWVKVTKCYFPGDLPGNIGHPCISEVNEVYESNSDRTEMASYIRGPCEVLPSDKFKQENDRRCQLGIEASAKVQPIFLCRWFYDEVKKLFQPVTS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4461g00007 821 ProSiteProfiles BAH domain profile. 693 820 IPR001025 GO:0003682
Gabi4461g00007 821 SMART PHD_3 381 430 IPR001965 -
Gabi4461g00007 821 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4461g00007 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 443 IPR013083 -
Gabi4461g00007 821 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 820 - -
Gabi4461g00007 821 SUPERFAMILY FYVE/PHD zinc finger 372 437 IPR011011 -
Gabi4461g00007 821 ProSitePatterns Zinc finger PHD-type signature. 382 429 IPR019786 -
Gabi4461g00007 821 MobiDBLite consensus disorder prediction 440 517 - -
Gabi4461g00007 821 Gene3D - 672 821 IPR043151 -
Gabi4461g00007 821 MobiDBLite consensus disorder prediction 533 576 - -
Gabi4461g00007 821 MobiDBLite consensus disorder prediction 537 575 - -
Gabi4461g00007 821 MobiDBLite consensus disorder prediction 477 517 - -
Gabi4461g00007 821 MobiDBLite consensus disorder prediction 450 466 - -
Gabi4461g00007 821 CDD BAH 692 820 - -
Gabi4461g00007 821 Pfam PHD-finger 382 430 IPR019787 -
Gabi4461g00007 821 MobiDBLite consensus disorder prediction 16 32 - -
Gabi4461g00007 821 ProSiteProfiles Zinc finger PHD-type profile. 379 432 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4461g00007 Gabi-Chr4461 27955 37958 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4461g00007 PHD 2.2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4461g00007 - - gmx:100807139 1300.42