Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4461g00006 ATGGACGAGGGCAACGAGGATCCCAAAACGGACGGTTCGCCGGTTCAGAACGGTGAATTGGATGATGAGCGTTGCGGCAAGAAGGCCAAGGTGGATGCTGCCTCCGACGGCGGTGAATTGAAGAGAGTGGCGGAGATTGTGTTGGTTTTGTCGACGATGGCGACGGTGCGAGGTGGTAGGAAGCCCACCGATGTGGAGGTTGAGCTCATGAGGGAGGCTCGAACCAAGCTCGCCGAGCTCTGTCAGGGGCTCGCTCCGAAGGATATTGTGGCCAGGGAAGCTATTGGGACCGTGATTGAGGATCTTGGCTTGAACGCCAAGATTAAGGACCAGAGGTTAGGGTTTCGAACTCCCAAGATGTCCGTTGCCGAGAGGTATTCCCACGCTAAGTGGAAGATGGAGGAATCAAAGAAGTTTTCTACATCTCAGCCCTTGCAAACAAGCATTGGTGGAACAGTTGACAACCGTGTGCCATCACATGCTGTTCGAATGATTGCGCCTGATAAATCAATCCACACAGCAATCTCTTCCACAAGTACCATAGTGTCTATACCTGCCCATGTTTCTGCAGGATCTTCTGCAGCATTGCAATATCAATCGATCAGCAATGAAGTAAGACCACCTGTGGTTTCAGGTTTAATGCCTAGCAGTCACTTGGGGAGAAATTCATCTCCCTTAGCATTGCCTAAAGTTGAACACCCACAATTCAAAGTTGATGGAGGATCAAATGGGTCTTCTTATGTCCTGCAAATCCAAGTCATTGAATTGGCAATTGAATTTGAGAATTTTTCAACTGTAGCAAATTTGTCTGCAAACCAACCTTTGGTGAATGCTCCAACATGGCCAATACAGGCTCAATCTCCATCTTTAGCTAGAAGTGCATCAGAAAACAAGGTGCCTGGTCATAACCCTATCAAGGTTGAAGGAACAGCTGATGTAACTATGTCAAGGGCAGGGCCACAAATAACAAATGATCAGAGCTTTAGACCGTATATTACTCAAACAGCACCTGGAAATTTGTCTAGTATGCACCAGCCAGTGCAGGGCATGAACATTGTTCAGCCTCCTTTTATTCCTAGTCATGCGGATATTGCAAAGATTGTCCAGAAATTGCTACAACCAAAGGTTCCTGACCATCCCACATGGAGTCCTCCGTCAAGGGATTATATGAATAAGGCTTTGACATGCCAGATGTGCGAGCTCTCTGTCAATGAGATTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGTTTTCACTTGAAATGCTTGCAGCCATCGGTCTTACGAGGAATTCATAATAGAGTTGATTGGCACTGCATGAGGTGCTTAAGTTTAAGCGGTGGAAAGCCTTTGCCTCCAAAGTATGGTCGTGTCATGAGATCCTCAAACACACCACCGAAATTGCCCTCTAATACGGGTGGTATGCAACCATCTTCAGAGAAGAAAGCAGGGAGCGTAGATCCGAAGGTCAGCCCACAGAAGTTAACAACAAATGGGAGCCCTGTTCCAACTGTTTCCAGTGGAAATGACAATGTTGAGCCACCATCTGACTCAATGACCTCACCAGATGGGAAAGACATACAAGGTACCACCATTTCATCCAACATTGAACATGTTGATGAAAAGCATGATCCAAACATCTCTATGAAATCCCTTGGTGCAGCTTCCAGTCCTTCCACTTGCTTGCCAGGTGAAAGTTCTGCTGAACAAATAAATTCTGAGTCTTTGACCTGTAAGGAGACTTCAGAAACTGAGACTCTTCCTAAATTATCTGAGCCAGCTAAATGTGAAAATTTGCAATCTTCACAAGATTTTCATGTTAATCAGACAATACCACAAGACAATGCTGTAGTATCATCAGATAAACATGTTGACATTAGTTTAATGAATCATAAACAAAGGGAATCTCATGGAGGGGAAAATTTAATTTACGATATCAAGCGTGATGATCAAGATGTTGCACTAGCAAATTTTGTTGGAAGTTCTGGAACTGATACTGAAGGTAGACAGCACTCTGCATTATCTTCAGACACCTCACATGCTGTAGAATGGATTGGTGATGTTATACAACTTGTCGAAGAGAAAAAGTTTTACGGATCTTGCTGTGTTGATGGAGTAACATATAGGCTTCATGGTCATGCTCTTTTCCCCTCCAGCCATGGCAATTTAACACCTTTTAAAATTCAGTCTATGTGGGAAGATTGCAAAACTGGGTTCAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGGAGATTTGCCAGGGAATATTGGTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTATATTAGAGGCCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAAAATGACAGACGATGTCAGCTAGGAATTGAGGCAAGTGCTAAAGTACAGCCCATTTTCCTTTGCAGGTGGTTTTATGACGAAGTCAAAAAGTTATTTCAACCTGTTACCAGTTGA 2508 0.439 MDEGNEDPKTDGSPVQNGELDDERCGKKAKVDAASDGGELKRVAEIVLVLSTMATVRGGRKPTDVEVELMREARTKLAELCQGLAPKDIVAREAIGTVIEDLGLNAKIKDQRLGFRTPKMSVAERYSHAKWKMEESKKFSTSQPLQTSIGGTVDNRVPSHAVRMIAPDKSIHTAISSTSTIVSIPAHVSAGSSAALQYQSISNEVRPPVVSGLMPSSHLGRNSSPLALPKVEHPQFKVDGGSNGSSYVLQIQVIELAIEFENFSTVANLSANQPLVNAPTWPIQAQSPSLARSASENKVPGHNPIKVEGTADVTMSRAGPQITNDQSFRPYITQTAPGNLSSMHQPVQGMNIVQPPFIPSHADIAKIVQKLLQPKVPDHPTWSPPSRDYMNKALTCQMCELSVNEIDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGMQPSSEKKAGSVDPKVSPQKLTTNGSPVPTVSSGNDNVEPPSDSMTSPDGKDIQGTTISSNIEHVDEKHDPNISMKSLGAASSPSTCLPGESSAEQINSESLTCKETSETETLPKLSEPAKCENLQSSQDFHVNQTIPQDNAVVSSDKHVDISLMNHKQRESHGGENLIYDIKRDDQDVALANFVGSSGTDTEGRQHSALSSDTSHAVEWIGDVIQLVEEKKFYGSCCVDGVTYRLHGHALFPSSHGNLTPFKIQSMWEDCKTGFKWVKVTKCYFPGDLPGNIGHPCISEVNEVYESNSDRTEMASYIRGPCEVLPSDKFKQENDRRCQLGIEASAKVQPIFLCRWFYDEVKKLFQPVTS 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4461g00006 835 MobiDBLite consensus disorder prediction 454 531 - -
Gabi4461g00006 835 Gene3D - 686 835 IPR043151 -
Gabi4461g00006 835 MobiDBLite consensus disorder prediction 551 589 - -
Gabi4461g00006 835 MobiDBLite consensus disorder prediction 547 590 - -
Gabi4461g00006 835 ProSitePatterns Zinc finger PHD-type signature. 396 443 IPR019786 -
Gabi4461g00006 835 MobiDBLite consensus disorder prediction 1 32 - -
Gabi4461g00006 835 MobiDBLite consensus disorder prediction 491 531 - -
Gabi4461g00006 835 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 834 - -
Gabi4461g00006 835 MobiDBLite consensus disorder prediction 464 480 - -
Gabi4461g00006 835 CDD BAH 706 834 - -
Gabi4461g00006 835 Pfam PHD-finger 396 444 IPR019787 -
Gabi4461g00006 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 457 IPR013083 -
Gabi4461g00006 835 ProSiteProfiles Zinc finger PHD-type profile. 393 446 IPR019787 -
Gabi4461g00006 835 ProSiteProfiles BAH domain profile. 707 834 IPR001025 GO:0003682
Gabi4461g00006 835 SUPERFAMILY FYVE/PHD zinc finger 386 451 IPR011011 -
Gabi4461g00006 835 SMART PHD_3 395 444 IPR001965 -
Gabi4461g00006 835 MobiDBLite consensus disorder prediction 16 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4461g00006 Gabi-Chr4461 27955 37958 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4461g00006 PHD 2.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4461g00006 - - gmx:100807139 1290.79