Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4460g00003 ATGTGTGAGGAACCTCTTCCTTTATCTGCTTCTTGTTCCAAGGAACGCACAAAGGTGAAACAAGCATTGATGGTGTATAGGGACTTGTTTTGCAAACTTTTGAGTGAATACGAAGCAGAACAACTTGGACATTTGAAACCAAAAACAAAAGCCTTGACTGAAGCAGCAATGTTAATGCGGAAGAAGCATCAATGGGAGGACACTAAAAAGCAAGTGGGACATGTCAAAGGAATTGAAGTTGGTGACCAATTTCAATACAGGGCTGAACTCAATGTTATTGGCCTCCATCGTCAGTTTTCAAGTGGTATTGATTACATAGGGAAGGGTACAAACTCACTGGCCACAAGCATTGTTGTAACTCATCGCTATGCTAATGCTATAAAATCTTGCGGTTCCTTGGTTTATATAGGTCACGGAGGGAACCCTGATGTAAGAAGTAAATCAAGTAATGTTTTGCCACATGATCAGAAATTGGAAGTAGGAAATCTTGCTTTGAAGAATAGCATGGATGCAAAAAGTCCTGTGAGGGTTATATTGATGAAGGCTTGTGCAAGATTTGATGGGATGTACACATTTAGTAACAGCGATTCTAACTGCCGTTATATTTATGATGGCTTATATTTAGTGGAGAAGATGACACAAGGGAGAGGAAAATTTGGAAAGCTTGTGTTCAAGTTTACAATGAATAGAATTTTAGAGCAACCCGCAACTTGTGTTTCCTTTAAGGATGTGATTATGCAGAATGATAGCAGTTCAGGGCGATTTGCAGGTTCTACTCCAATGAAGAGAAACAAATCTAAAGGTTGTGCAGCCCAAAAGGATGTTGTCCGTGTGAATGATGTGTCAAAGGGGAAAGAAAAGTTTCCTATTCGGTTGGTCACATCAATAGATTGTGTTGAAATACCTCCATCATTTGATTACATAGTCGATATCATTTATTCAGAGAGATTCAACCAGCCAATTCTACATGGATGTGATTGTGTAGATGGATGTGTGGATTTTAAAAAATGTGGCTGCATTGTTAAGAATGGTGGAACAATACCTTATGACTGTAACAAAAGACTTGATTCTCAAATGAAATCATCCCTTATATATGAGTGTGGCCCTTCTTGTAAGTGCTCCAAATCTTGCATCAACCGGGTAAGTCAGTGTGGTATTCAGTTCCAATTGGAAATCTTCAAAACAGAATTGAAGGGTTGGGGTGTTAGAACACGATCTTTCGTTCCCTCTGGAAGCTTTGTGTGTGAGTACATTGGAGAAGTTCATCACAATAGAGAAGCGGGTTCTAGGCTTGTGGTTGATGACTATATATTTAACATAGGTGATGGCAAGGGCTTCTTCATTGATGCAACAAGACGTGGTAATATTGGAAGATTTATAAATCACAGTTGTTCTCCTAATCTCCATGTCCATGATATTTTTTATGGTCACAATGAAAAGAGCATTCCCCACAAAGTGCTGTTTGCTATAAAGGACATAGCTGCTGGTAGAGAGCTGAGTTATAATTATAATTGCTGCAAGGGAAGAATTATCAAGGTTGGGAGTAATAGTTGCTACTGTGGTTCACCTCAATGCAATGGACACATTCACATTTGA 1596 0.3904 MCEEPLPLSASCSKERTKVKQALMVYRDLFCKLLSEYEAEQLGHLKPKTKALTEAAMLMRKKHQWEDTKKQVGHVKGIEVGDQFQYRAELNVIGLHRQFSSGIDYIGKGTNSLATSIVVTHRYANAIKSCGSLVYIGHGGNPDVRSKSSNVLPHDQKLEVGNLALKNSMDAKSPVRVILMKACARFDGMYTFSNSDSNCRYIYDGLYLVEKMTQGRGKFGKLVFKFTMNRILEQPATCVSFKDVIMQNDSSSGRFAGSTPMKRNKSKGCAAQKDVVRVNDVSKGKEKFPIRLVTSIDCVEIPPSFDYIVDIIYSERFNQPILHGCDCVDGCVDFKKCGCIVKNGGTIPYDCNKRLDSQMKSSLIYECGPSCKCSKSCINRVSQCGIQFQLEIFKTELKGWGVRTRSFVPSGSFVCEYIGEVHHNREAGSRLVVDDYIFNIGDGKGFFIDATRRGNIGRFINHSCSPNLHVHDIFYGHNEKSIPHKVLFAIKDIAAGRELSYNYNCCKGRIIKVGSNSCYCGSPQCNGHIHI 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4460g00003 531 Gene3D SET domain 270 530 IPR046341 -
Gabi4460g00003 531 ProSiteProfiles SET domain profile. 388 504 IPR001214 GO:0005515
Gabi4460g00003 531 SMART set_7 388 510 IPR001214 GO:0005515
Gabi4460g00003 531 ProSiteProfiles Post-SET domain profile. 514 530 IPR003616 -
Gabi4460g00003 531 Pfam Pre-SET motif 282 380 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4460g00003 531 SUPERFAMILY PUA domain-like 55 240 IPR015947 -
Gabi4460g00003 531 Pfam SET domain 399 504 IPR001214 GO:0005515
Gabi4460g00003 531 ProSiteProfiles Pre-SET domain profile. 323 385 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4460g00003 531 Pfam SAD/SRA domain 72 234 IPR003105 -
Gabi4460g00003 531 SUPERFAMILY SET domain 272 512 IPR046341 -
Gabi4460g00003 531 SMART preset_2 278 372 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi4460g00003 531 ProSiteProfiles YDG domain profile. 73 230 IPR003105 -
Gabi4460g00003 531 SMART G9a_1 68 234 IPR003105 -
Gabi4460g00003 531 Gene3D - 54 250 IPR036987 -
Gabi4460g00003 531 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 11 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4460g00003 Gabi-Chr4460 18287 19954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4460g00003 29 527 Su(var)3-9 homologs AT1G73100 33.826 2.06e-79 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi4460g00003 SAD_SRA 7.3e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4460g00003 - - gmx:100807574 677.167