Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00086 ATGGGTTTGAGGGATTACAATGTAGAAGACAAAAATCTATACCTTCAAACCCCTACTTTCATCGAATGGCTCAAACCATCTTCCTCTCTAACTAGTTCACTATCATCATCTCCTTCTTCTTCCTTAACTCAGCATGAAACTATCCAGTTTTTTCCCATTTTAAATGGATTCACCCCTGGAAAGCCCTCTGAGGAAGACCATGAAGTGCAAAAGGAAGGTTTTGAAGTAAAAGAAGAAAAGGTGGAAAAGGTGACTGTGGCTTTGCACATTGGATTGCCTAACACTACAGAAAGTCCTGAAACTGATGATGATCAGAAGAATGTTTTACATGTTAAGGAAGAAGAAGAAGAACCCTTGAAGAAAACCTTCCATGGCTGTTCTTTTAACAAGGAGCGAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGACATGGGTCCGAATTTAGAAAAGGACCAGACTCACTTAGAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGTTATTGTTGTGCACAGGGTTGCAAGAACAACATCAATCATCCAAGAGGAAAGCCCTTGAAGGACTTCAGAACGCTACAAACCCACTACAAAAGAAAGCATGGGGCAAAACCATTTATGTGCAGAAAATGTGGGAAAGCATTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGTAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCTCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCCCCACATCCTTCTATTGAAGCCTTCGAGGATGAGAAAGAATCCATTACCGGGTCTGATGAAGATGAAGTTGCTCATACATAA 936 0.4113 MGLRDYNVEDKNLYLQTPTFIEWLKPSSSLTSSLSSSPSSSLTQHETIQFFPILNGFTPGKPSEEDHEVQKEGFEVKEEKVEKVTVALHIGLPNTTESPETDDDQKNVLHVKEEEEEPLKKTFHGCSFNKERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHYKRKHGAKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSIEAFEDEKESITGSDEDEVAHT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00086 311 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Gabi4459g00086 311 Gene3D Classic Zinc Finger 148 171 - -
Gabi4459g00086 311 FunFam Zinc finger protein WIP2 202 284 - -
Gabi4459g00086 311 MobiDBLite consensus disorder prediction 279 311 - -
Gabi4459g00086 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Gabi4459g00086 311 Gene3D Classic Zinc Finger 208 285 - -
Gabi4459g00086 311 Pfam Zinc finger, C2H2 type 149 168 IPR013087 -
Gabi4459g00086 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 253 IPR013087 -
Gabi4459g00086 311 PANTHER ZINC FINGER PROTEIN WIP2 27 304 IPR043584 GO:0003700|GO:0010468
Gabi4459g00086 311 SUPERFAMILY beta-beta-alpha zinc fingers 218 253 IPR036236 -
Gabi4459g00086 311 SMART c2h2final6 196 228 IPR013087 -
Gabi4459g00086 311 SMART c2h2final6 149 171 IPR013087 -
Gabi4459g00086 311 SMART c2h2final6 233 253 IPR013087 -
Gabi4459g00086 311 SUPERFAMILY beta-beta-alpha zinc fingers 117 172 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00086 Gabi-Chr4459 795763 799634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00086 9 301 C2H2 Transcription Factor Family AT1G08290 55.718 4.55e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4459g00086 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00086 - - gmx:100819306 485.723