Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00082 ATGTATAGCAATTTCAAGGAGCAAGCCATAGAGTACGTGAAGCAAGCCGTACAGGAAGACAATGCTGGGAACTATGCGAAAGCGTTACGTCTCTACACGAACGCTCTGGATTACTTCGAGATCCATTTGAAGTACGAGAAGAACCCTAAGATCAAAGAAGCCATCACTCAGAAATTCACCGAGTATCTGCGGCGGGCCGAGGAGATCCGGGCCCTCCCCGACGATGGAGGGCCCAGCCCGGCCTCCAACAGGGATGCCGCGGTGGCGACGCGGCCCAAGACGAAGCCCAAGGACGGGGAAGGGGGAGACGGGGAGGACCCGGAGCAGGCGAAGCTCAGGGCTGGGCTCAATTCGGCGATCATAAGGGAGAAACCCAATGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAGCAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTTCCTCAGTTCTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCACCTGGAACAGGGAAATCGTATTTAGCCAAGGCAGTTGCAACAGAAGCTGACTCCACATTTTTCAGTGTTTCCTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAGCCTTTTCCAAATGGCTCGAGAAAGTGCTCCTTCTATCATATTTGTTGATGAAATAGACTCGCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTCGTTCTTGCAGCAACAAATACACCCTATGCCTTGGACCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCACTACCTGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAATATTTGGCTAGCAGGACGGAGGGGTTTTCTGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTATTTGAACCTATTCGCAAAACCCAAGATGCCATGTTTTTCTTCAAGAATCCTGAGGGTATGTGGATCCCATGTGGATCAAAGCAACAAGATGCATTACAAATCACAATGCAGGACCTTGCTGCAAAAGGACTTGCTTCTAAGATACTTCCACCCCCTATTGCGAGAACAGATTTTGACAAGGTACTTGCCAGACAAAGGCCTACAGTAAGCAAAGCTGACCTTGAGGTTCATGAGAGATTCACGAAGGAGTTTGGAGAGGAGGGTTAA 1302 0.4831 MYSNFKEQAIEYVKQAVQEDNAGNYAKALRLYTNALDYFEIHLKYEKNPKIKEAITQKFTEYLRRAEEIRALPDDGGPSPASNRDAAVATRPKTKPKDGEGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLAESDFEYLASRTEGFSGSDISVCVKDVLFEPIRKTQDAMFFFKNPEGMWIPCGSKQQDALQITMQDLAAKGLASKILPPPIARTDFDKVLARQRPTVSKADLEVHERFTKEFGEEG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00082 433 SMART AAA_5 162 298 IPR003593 GO:0016887
Gabi4459g00082 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 384 IPR027417 -
Gabi4459g00082 433 ProSitePatterns AAA-protein family signature. 268 287 IPR003960 GO:0005524|GO:0016887
Gabi4459g00082 433 MobiDBLite consensus disorder prediction 70 109 - -
Gabi4459g00082 433 Pfam Vps4 C terminal oligomerisation domain 366 430 IPR015415 -
Gabi4459g00082 433 Gene3D - 125 421 IPR027417 -
Gabi4459g00082 433 FunFam vacuolar protein sorting-associated protein 4A 298 413 - -
Gabi4459g00082 433 SMART smart 2 78 IPR007330 -
Gabi4459g00082 433 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Gabi4459g00082 433 PANTHER AAA DOMAIN-CONTAINING 16 431 - -
Gabi4459g00082 433 Gene3D - 6 73 - -
Gabi4459g00082 433 MobiDBLite consensus disorder prediction 90 109 - -
Gabi4459g00082 433 SUPERFAMILY MIT domain 2 80 IPR036181 -
Gabi4459g00082 433 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Gabi4459g00082 433 Pfam ATPase family associated with various cellular activities (AAA) 167 296 IPR003959 GO:0005524|GO:0016887
Gabi4459g00082 433 CDD MIT_VPS4 4 77 IPR045253 -
Gabi4459g00082 433 CDD RecA-like_VPS4 124 294 - -
Gabi4459g00082 433 Gene3D - 298 413 - -
Gabi4459g00082 433 FunFam Vacuolar protein sorting-associated protein 4 125 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00082 Gabi-Chr4459 761619 766606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00082 161 354 Calmodulin-binding Proteins AT3G56690 36.735 2.99e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00082 K12196 - gmx:100788150 794.653