Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00074 ATGAAGGTCATCGCTGCGTATTTGCTGGCCGTATTGGGAGGAAATTCATCCCCTTCAGCTGATAATCTCAAGAACATCCTAGGCGCAGTTGGAATTGAGGCTGAGGATGAGAAGATTGAGTTTCTTTTAACTGAAGTCAAGGGCAAAGATATTGCGGAGGTAATTGCTAGTGGTAGAGAGAAGTTGGCTTCAGTACCTTCTGGTGGTGGTGGTGCTGTTGCTGTTGCTGCTGCACCTGCAGGAGGTGCTGCAGCTGGTGGCGCTGCACCTGCTGCTGAGGCAAAGGAGGAAAAGAAGGTAGAAGAGAAGGAAGAGTCTGACGATGACATGGGTTTTAGTTTATTTGACTAA 351 0.4815 MKVIAAYLLAVLGGNSSPSADNLKNILGAVGIEAEDEKIEFLLTEVKGKDIAEVIASGREKLASVPSGGGGAVAVAAAPAGGAAAGGAAPAAEAKEEKKVEEKEESDDDMGFSLFD 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00074 116 Hamap 50S ribosomal protein L12 [rpl12]. 2 116 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gabi4459g00074 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi4459g00074 116 FunFam 60S acidic ribosomal protein P2 1 59 - -
Gabi4459g00074 116 Gene3D - 1 59 IPR038716 -
Gabi4459g00074 116 CDD Ribosomal_P2 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gabi4459g00074 116 MobiDBLite consensus disorder prediction 83 116 - -
Gabi4459g00074 116 MobiDBLite consensus disorder prediction 92 106 - -
Gabi4459g00074 116 Pfam 60s Acidic ribosomal protein 17 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00074 Gabi-Chr4459 695872 697340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00074 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 67.241 6.82e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00074 K02943 - cit:102608780 124.79