Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00066 ATGGACTTTGGAAATGAATCTCCTTATTATTCATCTTCACCATCTTCCACTTCTTCTCAAAGCCAATCACCAAGCACACCATGCAACCCCAATTCTCCATCAGATTCATTATTGCATGCACATGCACAGGCATTGTCAAGCTCTCACAAGAGGAAAACAGGAAGAAAGAAGTTCCGGGAGACAAGACACCCGATTTATAGGGGTGTCCGGCAAAGAAACGGAAACAAATGGGTGTGTGAAGTAAGGGAACCAAACAAGAAGTCAAGGATATGGCTTGGGACTTACCCTACGCCAGAAATGGCAGCTAGGGCACATGATGTGGCTGCCCTGGCACTTAAGGGCAGTTCAGCCGTTTTTAATTTCCCTCATTTAGCTTCTCTTATTCCAGTTGTAAAGTCAACTTCAGCAGCAGATATAAGAGAAGCTGCAAAGGCTTTTACACTAACCAACCCTTCATCCTCTACAAACAATTTATGGATCAACACAAACCCTTGTTTGGTGGAATTAGGTAAGAGCCAAGAAAGGGTACTAGTTGATGATAATATTTTTAAAAACACATGTACACAAGAGAAGATTATGAATAATGATGATGAGTCCAAATCAATGTTCATTGATGAGGAAGCATTGTATAATATGCCAGGTTTGCTAGATAGTATGGCAGAGGGTCTTCTTATTACGCCACCGTCCATGAAGAAAACATTGGATTGGGACGATGTTGATTGCGAAATAGACTTGACTCTTTGGACAGATTAA 753 0.413 MDFGNESPYYSSSPSSTSSQSQSPSTPCNPNSPSDSLLHAHAQALSSSHKRKTGRKKFRETRHPIYRGVRQRNGNKWVCEVREPNKKSRIWLGTYPTPEMAARAHDVAALALKGSSAVFNFPHLASLIPVVKSTSAADIREAAKAFTLTNPSSSTNNLWINTNPCLVELGKSQERVLVDDNIFKNTCTQEKIMNNDDESKSMFIDEEALYNMPGLLDSMAEGLLITPPSMKKTLDWDDVDCEIDLTLWTD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00066 250 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Gabi4459g00066 250 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Gabi4459g00066 250 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Gabi4459g00066 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 249 IPR045277 GO:0003700
Gabi4459g00066 250 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Gabi4459g00066 250 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Gabi4459g00066 250 MobiDBLite consensus disorder prediction 1 65 - -
Gabi4459g00066 250 MobiDBLite consensus disorder prediction 1 43 - -
Gabi4459g00066 250 MobiDBLite consensus disorder prediction 45 63 - -
Gabi4459g00066 250 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Gabi4459g00066 250 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Gabi4459g00066 250 CDD AP2 64 124 IPR001471 GO:0003700|GO:0006355
Gabi4459g00066 250 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00066 Gabi-Chr4459 569295 570047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00066 46 249 AP2-EREBP Transcription Factor Family AT4G25470 45.588 9.16e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4459g00066 AP2 3.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00066 - - gmx:100816109 279.641