Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00052 ATGGAGTTTTGGGGTGCTGAAGTTAAGGTTGGGGAGGTTGTTAAGGTCGACCCAAGTGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAAGGAAGTGAACCTGTGTTTCTTAACTTGAAAGTTGGTGACCAGAAACTTGTTTTGGGAACCCTTTCCAGGGAGAAAATCCCTCAAATATCTCTTGAATTAGTTCTGGACAAGGAGTTTGAGCTTTCCCACAATTCGAAGAATGCCAGTGTCTATTTCTGTGGATACAAAACATTTTATGCTGGTGATGAGAGTGAGGAGGATGACTTTACTGATAGTGATGAAGATCTGCCACTGACTATAACAGAGAATGGAAAACCTGAAACAAAAGCTGAAGACTTAAAGGTTTCTGAATCTAAAAAACCTAATGCCAAGATTAGTGCATCAGCAAAACAAGTAAAGGTTATTGATCCAAAGAAAGAAGAGGAATCTGATGATGAATCTGATGAAGATGATGAATTTGGAAGTTCTGATGATGAGATGGAGGATGCTGATAGTGGAAGTGGTGAGGAGAGCGAGAGTGATGAAGATGATGATGAAGAGACTCCTGCTAAGAAGGTGGATCTGGGAAAGAAGAGGCCCAATGACTCTGCATTAAAAACTCCAGTTTCTACCAAGAAAGCCAAAAATGCTACTCCTGAAAAAACTGATGGGAAGAAAACTGTACGTACAGCAACTCCTCACCCTATGAAGAAAGGTGGAAAGACTCCCAACAGTGAAGCCAAGGTCCAGACTCCCAAGTCTGGCGGACAAATCTCTTGCAAAAGTTGTAGCAAGTCTTTCAACTCTGAAAGTGGTCTGCAACAACATAATAAGGCTAAGCATGGTGCTGAGTGA 891 0.4198 MEFWGAEVKVGEVVKVDPSEFEACIHLSQAALGEAKKDKGSEPVFLNLKVGDQKLVLGTLSREKIPQISLELVLDKEFELSHNSKNASVYFCGYKTFYAGDESEEDDFTDSDEDLPLTITENGKPETKAEDLKVSESKKPNAKISASAKQVKVIDPKKEEESDDESDEDDEFGSSDDEMEDADSGSGEESESDEDDDEETPAKKVDLGKKRPNDSALKTPVSTKKAKNATPEKTDGKKTVRTATPHPMKKGGKTPNSEAKVQTPKSGGQISCKSCSKSFNSESGLQQHNKAKHGAE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00052 296 MobiDBLite consensus disorder prediction 256 288 - -
Gabi4459g00052 296 MobiDBLite consensus disorder prediction 124 138 - -
Gabi4459g00052 296 MobiDBLite consensus disorder prediction 102 296 - -
Gabi4459g00052 296 MobiDBLite consensus disorder prediction 228 242 - -
Gabi4459g00052 296 FunFam Histone deacetylase HDT1 1 99 - -
Gabi4459g00052 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 296 IPR013087 -
Gabi4459g00052 296 Gene3D Nucleoplasmin core domain 1 98 - -
Gabi4459g00052 296 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Gabi4459g00052 296 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Gabi4459g00052 296 MobiDBLite consensus disorder prediction 160 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00052 Gabi-Chr4459 388564 391281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00052 1 96 C2H2 Transcription Factor Family AT3G44750 62.500 1.47e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4459g00052 NPL 3.6e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00052 - - gmx:100792094 382.874