Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00041 ATGGGGAGCAAGGTCACAGTCACAGATCACCACTTATCCACCGTACGATCCATCGTTGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTACACATGGCCAATAATGACGTCACCGCTGCCATTAACATCATCTTCGACAGTACCCATACCACCAAATTCAAACCCACTCGCACCACCACCGATACTCCTCACCAAGATTCTCCTCTAAAATCGAACCCTAACACCGTCATAGCCAACTCCGACCACAATTGCGGAGGAGGAGAAAACAGCGATAACTGCCCTGTTGGATCCGATGATTGGTGGTTCGTAGGTTGTGGCGAATTGACAGGGTTGTCAACTTGCAAAGGGAGGAGTATAAAATCCGGTGAGCAAGTGTTTTTCAAGTTTCCGATAAAGAGAGTCTCTGCTTCTCCCTCTCCGGGTAAGGGTTTTGGAAGAGGGCGACAGGGTGCAGCAACTTGTTCGGAGATAGTTCGGTTTTCTACTCAACAAGCTGGAGAGATTGGTAGAATACCAAATGAATGGGCTCGTTGTCTTTTGCCTCTTGTGCGGGATAATAAGGTTAAGATTGAAGGGCATTGTAAATTTGCACCTAATGTTTTGGGCATCATGGACACCGTTGTTTTGACAATCAGTGTATTCATCAACAGTTCAATGTTTGGTAAGCATCACCAGGTTTCTCTCAAGGATGCTACCAATTCCACAGATGAATCAGTGTTTCATCCTCTTCCAGCCTTGTTTCGGCTGCTAGGCCTGAACCCTTATAAGAAGGCAGAGTTAACTCCTGGTGACTTCTGTTCCCTAAAGCGTCCTTTCAACCTAAAGGTCACATTACTACATGCCAAGTCGGAACATCCTTCTCAAAATGGTAATGAGAATGGCAATGAGGATTCCATTTCCGAAATTGATCTCGAGAACATTGTTGGTGTTGGATCAAACTCAGAGTTAGAGGAAATGGATCCCCCTGGCAATCTTCTGTGTGAACTGCGGCCCTATCAAAAGCAGGCTCTTTATTGGATGGTCCAGATGGAGAAGGGACGACCTATGGATGAGACAGCAACAACCCTTCATCCATGTTGGGAGGCGTATCGCTTGGCTGACAAGAGGGAGCTTGTTATTTATCTGAATGCATTTTCTGGTGAAGCTGCAATAGAATTTCCTAGCACTCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGACTTGGAAAGACCATCATGACCATATCCCTTCTCCTTGCCCATTCTGGAAGGGGTGGATCATTAGGCAGTCAAATCATAGCTCAGTCCTTCATTGAAGGTGAAGTTAGTAATACAGTGCACAATTTTTCAAACATACCAAAGAAAGCAGCCAAATTTGCTGGTTTTGATAAACTGATAAAGCAAAAGAATGTTCTAACAAGTGGTGGTAACTTGATAATATGTCCCATGACTCTTCTCGGACAGTGGAAGGCAGAGATTGAAACTCATGTGCAGCCTGGGTCTCTGTCTCTATATGTTCATTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTAGCTCAAAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATACGGAGGAGAATGGTGGACTTTTCTCAATTCGGTGGTTTAGAGTAGTTCTTGATGAGGCACATACTATAAAATCTACTAAAAGCCAAATTTCTATGGCAGCTGCTGCTCTAATTGCTGACCAACGTTGGTGTCTTACTGGCACTCCAATCCAGAACAACCTTGAGGATATTTACAGTCTTCTCCGGTTTCTGAGAATAGAACCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAACCATTCGAGGGTGGTGATGAGAGAGGGTTGAAGTTAGTTCAGTCTATTTTGAAGCCAATCATGCTGAGGAGAACCAAACATAGCACAGATCGCGATGGCAAGCCTATCCTAGTTCTCCCGCCAGCTGATATGAAGATAATTTACTGTGAACCCACGGAAGCTGAAAAAGACTTTTACGAGGCCTTATTCAAAAGATCTAAGGTGAAGTTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAACTATCTAAGCGCTTCCTTAGAGGAACCTGTAATGCTTCAGAAGGCGAAGTAAAAGTTGCACCTTCGCGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGATGAGCAGGGAGAGTGTCCAATATGTCTTGAGGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCACCGTTTATGCCGGGAATGCCTCTTGGCAAGTTGGAGAAATTATAGTTCTGGTTTATGCCCTGTTTGTAGGAAAATAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAGTCGGTTTCAGATTGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAAGTATTCTTTTGAATGAACTTGAAAATCTTCGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTAGGAATAACATTTCATTTGTTCGTCTTGATGGAACTTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAGGACAGCGACACCCAGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCAGCTTCAAATGCTTTTGTCATGGACCCATGGTGGAATCCGGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAAGTGGCCATCAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCACGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3039 0.439 MGSKVTVTDHHLSTVRSIVGSEFTDMDIIRALHMANNDVTAAINIIFDSTHTTKFKPTRTTTDTPHQDSPLKSNPNTVIANSDHNCGGGENSDNCPVGSDDWWFVGCGELTGLSTCKGRSIKSGEQVFFKFPIKRVSASPSPGKGFGRGRQGAATCSEIVRFSTQQAGEIGRIPNEWARCLLPLVRDNKVKIEGHCKFAPNVLGIMDTVVLTISVFINSSMFGKHHQVSLKDATNSTDESVFHPLPALFRLLGLNPYKKAELTPGDFCSLKRPFNLKVTLLHAKSEHPSQNGNENGNEDSISEIDLENIVGVGSNSELEEMDPPGNLLCELRPYQKQALYWMVQMEKGRPMDETATTLHPCWEAYRLADKRELVIYLNAFSGEAAIEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGRGGSLGSQIIAQSFIEGEVSNTVHNFSNIPKKAAKFAGFDKLIKQKNVLTSGGNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGILASEFSSENTEENGGLFSIRWFRVVLDEAHTIKSTKSQISMAAAALIADQRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDRDGKPILVLPPADMKIIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLSKRFLRGTCNASEGEVKVAPSRAYVQEVVEELRKDEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNYSSGLCPVCRKIISRQDLITAPTESRFQIDIEKNWVESCKVSILLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNLQQREKVIKQFSEDSDTQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00041 1012 Gene3D - 388 655 IPR038718 -
Gabi4459g00041 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 838 IPR013083 -
Gabi4459g00041 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 605 IPR014001 -
Gabi4459g00041 1012 MobiDBLite consensus disorder prediction 55 75 - -
Gabi4459g00041 1012 SMART helicmild6 876 959 IPR001650 -
Gabi4459g00041 1012 Pfam Zinc finger, C3HC4 type (RING finger) 774 821 - -
Gabi4459g00041 1012 SMART ultradead3 327 627 IPR014001 -
Gabi4459g00041 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1001 IPR027417 -
Gabi4459g00041 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 643 IPR027417 -
Gabi4459g00041 1012 CDD SF2_C_SNF 843 970 - -
Gabi4459g00041 1012 Pfam Helicase conserved C-terminal domain 847 959 IPR001650 -
Gabi4459g00041 1012 ProSiteProfiles Zinc finger RING-type profile. 777 817 IPR001841 -
Gabi4459g00041 1012 SMART HIRAN_2 105 217 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gabi4459g00041 1012 ProSitePatterns Zinc finger RING-type signature. 792 801 IPR017907 -
Gabi4459g00041 1012 SMART ring_2 777 816 IPR001841 -
Gabi4459g00041 1012 SUPERFAMILY RING/U-box 764 823 - -
Gabi4459g00041 1012 CDD DEXDc_SHPRH-like 331 643 - -
Gabi4459g00041 1012 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 99 1012 - -
Gabi4459g00041 1012 Gene3D - 659 1012 IPR027417 -
Gabi4459g00041 1012 Pfam SNF2-related domain 334 721 IPR000330 GO:0005524|GO:0140658
Gabi4459g00041 1012 FunFam DNA repair protein RAD5B 386 644 - -
Gabi4459g00041 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 847 1012 IPR001650 -
Gabi4459g00041 1012 Pfam HIRAN domain 106 213 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00041 Gabi-Chr4459 327627 337454 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00041 1 1012 RAD5 or RAD16-like Gene Family AT5G22750 70.989 0.0 1490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4459g00041 SNF2_N 7e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00041 K15505 - gmx:100794558 1734.15