Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00024 ATGGCGGAGGACCGCAATGAGGTCAGTGATTACAGTTCGGAGGACGAGGGCGCTGAGGATTACAGGCGTGGAGGGTACCATGCGGTTCAGATTGGGGATACTTTCAAGAATGGGTGCTATGTGGTGCAGAGCAAGCTCGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGACACTCAGAAATCGCAATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGACGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCGGGACCTAATGGGCAGCATGTTTGTATGGTTTTTGAATTCCTTGGCGATAATCTTCTCACCCTCATCAAGTATAGTGATTATCGAGGGGTTTCCCTTCCCATGGTCAAAGAAATTTGTTTCCATATCTTGGTGGGTTTGGATTACTTGCATCGCGAGCTTTCTATAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTCCAATAGATCCAGCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACCAAGGACAAGATGGTCTCCAAGAATGGGCCCATAAATGACGGTAAAAGTTTGAATGGAGATCTGACCAAGAACCAAAAAAAGAAAATGCGGAAAAAGGCTAAAAAGGCAGCTCAAGGATGTGATGATCCACAAGGAAGTCATGGTCGTAGGAGAGGTAGCTGTTCTACAAGAAAGAAGTTGCTTGGAGCCGTTGATCTTAAATGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACATATAAACAATTCACAAACGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAACTTGTCACTGGCGATGTTCTTTTTGACCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGAAAGATTGCACTTAGTGGCCGCTATTCCCGGGATTTTTTCAATAGATATGGTGATCTGAGGCACATCCGTCGGTTGCGTTTCTGGCCTCTTACAAAGGTGCTATTGGAGAAGTATGATTTCAGTGAGCAAGAAGCAAATAACATGGCTGATTTCCTTGTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACGGCTGCTCAGTGCCTTAATCATCCATGGATCAGCACAGTTCCTCGTACTCTTGAGCCCTCATTGACTATTGTGCAATCTGATGCTATTGATGGGGAAATGTCTGAAAAGTTGAAGAGGGAAAAGGTTGAGCAGGAGGCTGTGGAAGTTGGTATGGGGAATATGGCCATAGATGGAACTTCAAAGTCACCCAAAGAGTTCCAATCTGTGAAGCCATCAAAATAG 1479 0.4375 MAEDRNEVSDYSSEDEGAEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSQYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVSLPMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSPIDPAKDPRKSGVPLILPNTKDKMVSKNGPINDGKSLNGDLTKNQKKKMRKKAKKAAQGCDDPQGSHGRRRGSCSTRKKLLGAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALSGRYSRDFFNRYGDLRHIRRLRFWPLTKVLLEKYDFSEQEANNMADFLVPLLDFVPEKRPTAAQCLNHPWISTVPRTLEPSLTIVQSDAIDGEMSEKLKREKVEQEAVEVGMGNMAIDGTSKSPKEFQSVKPSK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00024 492 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Gabi4459g00024 492 CDD STKc_SRPK 29 429 - -
Gabi4459g00024 492 FunFam Serine/threonine-protein kinase SRPK-like protein 259 429 - -
Gabi4459g00024 492 MobiDBLite consensus disorder prediction 208 254 - -
Gabi4459g00024 492 Gene3D Phosphorylase Kinase; domain 1 26 125 - -
Gabi4459g00024 492 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 238 - -
Gabi4459g00024 492 SUPERFAMILY Protein kinase-like (PK-like) 35 442 IPR011009 -
Gabi4459g00024 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Gabi4459g00024 492 Gene3D Transferase(Phosphotransferase) domain 1 94 429 - -
Gabi4459g00024 492 SMART serkin_6 40 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4459g00024 492 FunFam CMGC/SRPK protein kinase 26 125 - -
Gabi4459g00024 492 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4459g00024 492 Pfam Protein kinase domain 267 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4459g00024 492 MobiDBLite consensus disorder prediction 470 492 - -
Gabi4459g00024 492 ProSiteProfiles Protein kinase domain profile. 40 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00024 Gabi-Chr4459 237614 241801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00024 1 480 EF-hand Containing Proteins AT5G22840 66.922 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gabi4459g00024 Pkinase 2.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00024 K08832 - bvg:104898532 773.852