LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4459g00023	ATGGCGGAGGACCGCAATGAGGTCAGTGATTACAGTTCGGAGGACGAGGGCGCTGAGGATTACAGGCGTGGAGGGTACCATGCGGTTCAGATTGGGGATACTTTCAAGAATGGGTGCTATGTGGTGCAGAGCAAGCTCGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGACACTCAGAAATCGCAATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCACTACACTGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGACGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCGGGACCTAATGGGCAGCATGTTTGTATGGTTTTTGAATTCCTTGGCGATAATCTTCTCACCCTCATCAAGTATAGTGATTATCGAGGGGTTTCCCTTCCCATGGTCAAAGAAATTTGTTTCCATATCTTGGTGGGTTTGGATTACTTGCATCGCGAGCTTTCTATAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTCCAATAGATCCAGCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACCAAGGACAAGATGGTCTCCAAGAATGGGCCCATAAATGACGGTAAAAGTTTGAATGGAGATCTGACCAAGAACCAAAAAAAGAAAATGCGGAAAAAGGCTAAAAAGGCAGCTCAAGGATGTGTTGGGAAGGAAAATCCTGACGAAATTGAGGAGGATTATAAAGCACCTGAGCAAGATGATTGTAGTAATGATGTGAAACCAAGTGCAGAATCTGGTGAAGGTAAACCTAATAGTCCTGTGAGTAAAGATGAATCAACAAAGTCTTTTGAAACTAAGGATGATCCACAAGGAAGTCATGGTCGTAGGAGAGGTAGCTGTTCTACAAGAAAGAAGTTGCTTGGAGCCGTTGATCTTAAATGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACATATAAACAATTCACAAACGATATTCAGACAAGGCAATATAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAACTTGTCACTGGCGATGTTCTTTTTGACCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGAAAGATTGCACTTAGTGGCCGCTATTCCCGGGATTTTTTCAATAGATATGGTGATCTGAGGCACATCCGTCGGTTGCGTTTCTGGCCTCTTACAAAGGTGCTATTGGAGAAGTATGATTTCAGTGAGCAAGAAGCAAATAACATGGCTGATTTCCTTGTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACGGCTGCTCAGTGCCTTAATCATCCATGGATCAGCACAGTTCCTCGTACTCTTGAGCCCTCATTGACTATTGTGCAATCTGATGCTATTGATGGGGAAATGTCTGAAAAGTTGAAGAGGGAAAAGGTTGAGCAGGAGGCTGTGGAAGTTGGTATGGGGAATATGGCCATAGATGGAACTTCAAAGTCACCCAAAGAGTTCCAATCTGTGAAGCCATCAAAATAG	1635	0.4318	MAEDRNEVSDYSSEDEGAEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQKSQYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVSLPMVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSPIDPAKDPRKSGVPLILPNTKDKMVSKNGPINDGKSLNGDLTKNQKKKMRKKAKKAAQGCVGKENPDEIEEDYKAPEQDDCSNDVKPSAESGEGKPNSPVSKDESTKSFETKDDPQGSHGRRRGSCSTRKKLLGAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALSGRYSRDFFNRYGDLRHIRRLRFWPLTKVLLEKYDFSEQEANNMADFLVPLLDFVPEKRPTAAQCLNHPWISTVPRTLEPSLTIVQSDAIDGEMSEKLKREKVEQEAVEVGMGNMAIDGTSKSPKEFQSVKPSK	544

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4459g00023	544	ProSitePatterns	Protein kinases ATP-binding region signature.	46	69	IPR017441	GO:0005524
	Gabi4459g00023	544	SMART	serkin_6	40	481	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4459g00023	544	MobiDBLite	consensus disorder prediction	189	307	-	-
	Gabi4459g00023	544	CDD	STKc_SRPK	29	481	-	-
	Gabi4459g00023	544	MobiDBLite	consensus disorder prediction	522	544	-	-
	Gabi4459g00023	544	FunFam	Serine/threonine-protein kinase SRPK-like protein	311	481	-	-
	Gabi4459g00023	544	Gene3D	Phosphorylase Kinase; domain 1	16	122	-	-
	Gabi4459g00023	544	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	10	503	-	-
	Gabi4459g00023	544	MobiDBLite	consensus disorder prediction	286	301	-	-
	Gabi4459g00023	544	Pfam	Protein kinase domain	319	481	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4459g00023	544	Pfam	Protein kinase domain	40	179	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi4459g00023	544	MobiDBLite	consensus disorder prediction	245	267	-	-
	Gabi4459g00023	544	SUPERFAMILY	Protein kinase-like (PK-like)	35	494	IPR011009	-
	Gabi4459g00023	544	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	167	179	IPR008271	GO:0004672\|GO:0006468
	Gabi4459g00023	544	Gene3D	Transferase(Phosphotransferase) domain 1	123	482	-	-
	Gabi4459g00023	544	FunFam	CMGC/SRPK protein kinase	26	125	-	-
	Gabi4459g00023	544	ProSiteProfiles	Protein kinase domain profile.	40	481	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4459g00023	Gabi-Chr4459	237614	241801	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4459g00023	1	532	EF-hand Containing Proteins	AT5G22840	67.949	0.0	726

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Gabi4459g00023		Pkinase	3.4e-21	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4459g00023	K08832		-	gmx:100791829	979.163