Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00012 ATGGCTGTTGCTGGTCTTCACAATGTGGCTGTGCTTGAATCTACTTTCCTTGGGGATTCCCATTCTCAGTCATCTGGGAGGCAAGGAGATCGAGGGAGGGGAGGCACCCGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCATGTGGTGAGACGAGTTCAAGGAAGACCTGGAGAAGTGTTACCCCAACAAAGGAGTGATGGGTTGGTTGCAGACCTCTCACAGGAAAATTTGCCAGATAGCCACCAAAGGGAAGGGCATATGATAGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAGCGTGGTCACAGTCACAAAGTCAGAATGAGTCCCATGATGAACCGGAGGAACTAAACAATTCTAGCTTCGAAAACTCTTCTGATTTAGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTTCTAGGGGTCATGCATCAAATATTTCCCGAGGAAATAGTGGTTCAAGGGGAGAATGGCTTGGGGAAACTGAGCAGGAAAGAGTGAGTATCATAAGGGAGTGGGTACAGATGAGTAGCGAGCACAGAGGTGTTTCTTCTGGGGAAAATAGAGAAGAACAGTCTTCTGAAATTGGTACCCAAATCGAATGTGTTAGTGATGGATTTGTAGTTAATCAGAATGAGGGCCAAACTGAGCATACACGGAGGGGGATCCGTAAATTATGTGGCCGGCAGGTTCTGCTTGATATGCTTAAGAAGGCTGAGATGGAAAGGCAAAGAGAAGTTAAGGAATTGTTGGACCATCAGGCAGTATCTCATTTTCCTCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGATTCTTGAGAAATGATAGATCGATTGATAATAACAGGTCCATGTCCATTGCAGAAAGTGAATTAGGCTTATTGAGGCAAAAGCAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTTGGGTTGCAGTCAAGTAACCACCAACCTGTCTGATACCTCATCTGACAGTGATGTTGATGTTAATACATCTGAACAAACTGGAGCTAGCTGTTCACAAATGTTCCCAACTGAACCTTCTGAGCAATCAGAGCCTAATAACAGGGGAAGTGACAGACTTGGGATATCAGGCGGTCAAAATTGTTCACAAGGAACTACTTGTGAGAATTTAGATTGTCAAGCCTCTACTGTTCTTGGAGAAACAAGTTATTGGGAATCGTCTTCCAGTATCTGGGTTAAAAGAAGAGATGGCACTGGACAAAATGTTGATATGATGCCAACCGTAGATATTGCTAATGATCCGACCCTACCAAGCTTGCAAAGTGAAGATACAGAGCATGACAATATTCAAGAACTAAGTGAGATACAAACCCAGCAATCTCAGCTGGGTGATATAACTGATGACGAAAGCAACTTATCAAATCATAACAATCATGGAGAGGGCAATATTGTTGATGATGTTGTTTTGATTGAAACTGTTGCTCTGGATGTGGAGCAACAGGAAGATGTTATTATTGAAAATGATGGGAGTGATTGGCATCAAACTAACGTTGAATGGAGAAATAGCACCCAGGATAATGTGGATGATAATCAGCTCAGTAGCACATCAAATGAATGGCCCCAAAATATCTTGGGAAATGAAGACAGAGAAAATTCTCGTCCGCAAGAGCAAGAAGGCCCCGAAATGTGGCAGGAAGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGACCTTCTGACCATGATGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTGAGTAGGAGAAGTGTCTCAAACCTCCTTCACAGTAGTTTTCGGGAAAGCCTTGACCAATTGATACAAACATATGTTGAAAGGCAAGGTCATGCTCACGTTGAATGGGAGCTGCAAGAAACAACCCCATCTTCTCCTTTGGCAGAACGAGACCTGGAACAGCAGAGTAGGGATCGGATTGTGGGTCCAGAGGATGCTGTTAATAGTTCACTTGACCTCCCCTTGCCACCAACACCTCCTCCTCAGCCTCTATGGGATCGACACTCACGTCATGACAACTGGTCACGGAATTACTTAAATAATCAGCGGCTAGGAATTGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAGAGAATGCTAGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGACAGGAAGTTTCTGCAGCCCTCAATCGCTCAACTGGTTCATCAGGAATGCATGACCATGATTCACCAGATGATAAATCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATATGCTGCGAAAGCAAGATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGCTCAAAATGTGCCAATGATTTGCTCCAAGGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAA 2562 0.4364 MAVAGLHNVAVLESTFLGDSHSQSSGRQGDRGRGGTRSSSLLQMWREIEDEHVVRRVQGRPGEVLPQQRSDGLVADLSQENLPDSHQREGHMIEDAVLGENESEAWSQSQSQNESHDEPEELNNSSFENSSDLGEVERERVRQIFREWMNSGSRGHASNISRGNSGSRGEWLGETEQERVSIIREWVQMSSEHRGVSSGENREEQSSEIGTQIECVSDGFVVNQNEGQTEHTRRGIRKLCGRQVLLDMLKKAEMERQREVKELLDHQAVSHFPHRNRIQALLRGRFLRNDRSIDNNRSMSIAESELGLLRQKQTVSGLREGFFFRKDNLGCSQVTTNLSDTSSDSDVDVNTSEQTGASCSQMFPTEPSEQSEPNNRGSDRLGISGGQNCSQGTTCENLDCQASTVLGETSYWESSSSIWVKRRDGTGQNVDMMPTVDIANDPTLPSLQSEDTEHDNIQELSEIQTQQSQLGDITDDESNLSNHNNHGEGNIVDDVVLIETVALDVEQQEDVIIENDGSDWHQTNVEWRNSTQDNVDDNQLSSTSNEWPQNILGNEDRENSRPQEQEGPEMWQEDGGFQEAVEIWLGGPSDHDVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLHSSFRESLDQLIQTYVERQGHAHVEWELQETTPSSPLAERDLEQQSRDRIVGPEDAVNSSLDLPLPPTPPPQPLWDRHSRHDNWSRNYLNNQRLGIEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGMHDHDSPDDKSKWECVRKGLCCICCESKIDSLLYRCGHMCTCSKCANDLLQGRRKCPMCQAPVVEVIRAYSIQ 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 464 488 - -
Gabi4459g00012 853 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Gabi4459g00012 853 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 778 851 IPR013083 -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 336 385 - -
Gabi4459g00012 853 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 445 853 - -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 532 556 - -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 532 571 - -
Gabi4459g00012 853 CDD mRING-HC-C3HC5_NEU1 801 850 - -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 152 171 - -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 19 38 - -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 152 173 - -
Gabi4459g00012 853 SUPERFAMILY RING/U-box 800 846 - -
Gabi4459g00012 853 Coils Coil 729 756 - -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 101 135 - -
Gabi4459g00012 853 Pfam Zinc finger, C3HC4 type (RING finger) 798 845 - -
Gabi4459g00012 853 MobiDBLite consensus disorder prediction 464 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00012 Gabi-Chr4459 141925 147303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00012 801 847 C3H Transcription Factor Family AT3G06140 38.298 7.82e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4459g00012 - - gmx:100804887 1277.31