Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4459g00010 ATGGCGAAAGGTGCGGATTCGGATGAGTTTTTGCTTCTTTCTAGGGTTCGGACGGGTCTCAAGAGGGAGTTTGCATTCGCCATGAAGGCTCAATCCGAGATCTGTGGTGGTTCTTTGGGTCGAACCAGGGCCAGTAAGAACCGGAATGGAGTTGTTCCGGTTCAGACCGCTCCGGCCGGCAAGAGGTCCAGGAAGTCCGGTTCTTTCGAGGGAGCGCTGGAAAATTCGGAGGATGTGGTTGATGCAACGAGCGAGGAGGAAGCTAAAAGCGACGTCGTTGATGTCACGAGCGACGACGAACCCAAGAACCAAGTGGGAGAATCCGCTGCAATGCCCGTATGCGAAGAGGAGCCGAAGAATGATGTTGTGGAAACTGTGATCAACGAAGAGGAGCCGAAGAATGATGTTGTGGAAACTGTGATCAACGAAGAGCCTCGTACGGTTGAATCTTTGAAGGAAGAAGAGGTTATGGATGGCATGGTGGTGCCAGTTTGCGATACCGTGGTCAAAGAGGAACAATGCACTATTGAGACAACCCCTGTTTCGGTTATTGTTGTTGCTGCTGATGATGATGATAAGGGGAAGAAAGTGTGTATGGAGAAGCCGCTGAGGCGGTTTACACGGTCAGCATTGAAGCAAAAATCTGATGAAACAGAGGTAATAACTTATGGGGAAAATGCTAATGCTGATGCTAGTGCTCTAGCTGTTGGAATTGATGATAATGTTAAAAGGGAAACTGAGCCTGCCCTTTTAAGAACCGTTCCAACGCCAATAAAAATGACCAAGACTACCTCGAAGAAGTTCCCTACAAAGCTAAAGGATCTTTTGGCGACAGGGATTCTTGAGGGGCTGCCAGTGAAGTATGTCAGGGGAATGAAGGCACGAAGACCTGGTGAAACAGGCCTCCGAGGAGTGATTAGTGGCGCTGGGATTTTGTGCTATTGTGAGATTTGTAAGGGGGTTGAGGTAGTCACACCCACTGTGTTTGAGCTGCATGCTGGTAGTTCAAACAAACGTCCCCCAGAGTATATTTACCTTGAGAATGGTAATACCCTCCGCGAAGTCATAAATGCCTGTTGGAGTGTTCCATTGGATACCTTGGAGGAAGCCATACAAAAGGTCCTCGTTGGCTTCACTATGAAAAAATCTATCACCTGTTTTGGCTGCAGAGGGTCTATTTCTGATGCATGCAATGCTGTCTCAAGACTAGCATGTGATTCATGCGTGGGATTGAAAGACTCTCAACCTAGCCCCCCTCAAACAGCTGTGGCAAGCAGTAAAAGTGCTTCACCAGCAGTTCAACCTAGGTATCAGTTCAACCTAGGATTGAAAGACTCTCAACCTAGCCCCCCTCAAACAGCTGCAGCAAGCAGTAAAAGTGCTTCACCAGCAGTTCAACCTAGATCACCAGAACCAGTTGTGGTTTCAAAACCAGTTGTCGTTCCAAAGTCATTAAACAATGGGATGAAGCACAGTACATCTCGTGGTAAGAGTCAAGGAAGACTAACTAGAAAGGATTTACGGTTGCACAAGTTGGTATTTGAAGAAGATGTGTTGCCCGATGGAACTGAAGTAGCCTACTATGCTCATGGAAAGAAACTATTGCTTGGTTACAAAAAGGGATTTGGAATTTTTTGTACCTGCTGCAACTCCGAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCTTACCTTCACATATACACATCTAATGGAGTCTCACTCCATGAGTTGTCTATCTCTTTATCAAAAGATCGGAGATTTTCTAGCAATGATAATGATGACCTCTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCATTTCACATAGATTGTGTTCCTCTTCCTTGCATTCCAAGTGGTACTTGGTATTGTAAGTATTGCCAGAATCTTTTCCAAAATGACAAACATGGGGAAAACAATTTGAATGCTCTGGCAGCTGGAAGGATCGCAGGAACTGATCCTTTAGAACAGATAAACCGAAGATGCATTCGTGTTGTCAAAACTGTAGCTGTTGACCATGGTGGATGTGCCTTGTGCAGATGTCATGATTTCAGTAAAAGCTTTGGTCCTCGGACGGTAATTATTTGTGATCAGTGTGAGAAGGAATATCATGTAGGGTGTTTGAAGGATCATAACATGCAGAACCTTGAGGAATTGCCAGAAGGAAATTGGTTCTGCAGTACAAACTGCAATCAAATTCATTCTACTCTAATGAATTTGGTGGCTTGTGGTGAGAAGAATCTCTCAGATTCCCTTCAAAGTTTGATTAAAAAGAAGCTTGAAGAAAAAGGTTTAGACAATGGGGTTGGTCTTGATATTAAATGGAGGGTTCTCAACTGGAAATTATCTGCTTCTGTTGAAACTAGGCAATTGCTTTCGAAGGCTGTTTCCATCTTCCATGAAAGGTTTGATCCGATAGTTGATTCTACTTCTGGTCGTGATTTTATTCCAACAATGCTGTATGGAAGGAACATCCGGGGTCAAGATTTTGGTGGAATGTACTGTGTGCTGCTCACTGTCAATCAAGTTGTCGTGTCTGCTGGAATATTTCGTGTCTTTGGGCCAGAAGTAGCAGAGCTTCCGTTAGTGGCTACAGTTGCTGATTACCAAGGACAGGGCTATTTTCAGTGCCTGTTTTCTTGCGTTGAGGGACTACTTGGATCTTTAAATGTGAGAAACCTTGTACTACCGGCTGCTGATGAAGCTGAATCAATATGGACCAGCAAATTTGGGTTTACAAAGCTAGACCAAGAAGAGATAAACAATTATAAGAAATTTTATCACATGATGATATTTCAAGGGACCTCGGTACTACAGAAGCCTGTTGCTGCACTCTGA 2886 0.448 MAKGADSDEFLLLSRVRTGLKREFAFAMKAQSEICGGSLGRTRASKNRNGVVPVQTAPAGKRSRKSGSFEGALENSEDVVDATSEEEAKSDVVDVTSDDEPKNQVGESAAMPVCEEEPKNDVVETVINEEEPKNDVVETVINEEPRTVESLKEEEVMDGMVVPVCDTVVKEEQCTIETTPVSVIVVAADDDDKGKKVCMEKPLRRFTRSALKQKSDETEVITYGENANADASALAVGIDDNVKRETEPALLRTVPTPIKMTKTTSKKFPTKLKDLLATGILEGLPVKYVRGMKARRPGETGLRGVISGAGILCYCEICKGVEVVTPTVFELHAGSSNKRPPEYIYLENGNTLREVINACWSVPLDTLEEAIQKVLVGFTMKKSITCFGCRGSISDACNAVSRLACDSCVGLKDSQPSPPQTAVASSKSASPAVQPRYQFNLGLKDSQPSPPQTAAASSKSASPAVQPRSPEPVVVSKPVVVPKSLNNGMKHSTSRGKSQGRLTRKDLRLHKLVFEEDVLPDGTEVAYYAHGKKLLLGYKKGFGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGVSLHELSISLSKDRRFSSNDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNLFQNDKHGENNLNALAAGRIAGTDPLEQINRRCIRVVKTVAVDHGGCALCRCHDFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTNCNQIHSTLMNLVACGEKNLSDSLQSLIKKKLEEKGLDNGVGLDIKWRVLNWKLSASVETRQLLSKAVSIFHERFDPIVDSTSGRDFIPTMLYGRNIRGQDFGGMYCVLLTVNQVVVSAGIFRVFGPEVAELPLVATVADYQGQGYFQCLFSCVEGLLGSLNVRNLVLPAADEAESIWTSKFGFTKLDQEEINNYKKFYHMMIFQGTSVLQKPVAAL 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4459g00010 961 ProSitePatterns Zinc finger PHD-type signature. 604 643 IPR019786 -
Gabi4459g00010 961 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 590 667 - -
Gabi4459g00010 961 CDD PHD1_AIRE 603 643 - -
Gabi4459g00010 961 Pfam Tify domain binding domain 537 585 IPR032308 -
Gabi4459g00010 961 Pfam Tify domain binding domain 304 359 IPR032308 -
Gabi4459g00010 961 MobiDBLite consensus disorder prediction 441 502 - -
Gabi4459g00010 961 Pfam PHD-finger 604 645 IPR019787 -
Gabi4459g00010 961 MobiDBLite consensus disorder prediction 441 465 - -
Gabi4459g00010 961 FunFam PHD finger family protein 788 957 - -
Gabi4459g00010 961 MobiDBLite consensus disorder prediction 82 101 - -
Gabi4459g00010 961 SUPERFAMILY FYVE/PHD zinc finger 688 746 IPR011011 -
Gabi4459g00010 961 MobiDBLite consensus disorder prediction 38 106 - -
Gabi4459g00010 961 ProSiteProfiles Zinc finger PHD-type profile. 601 646 IPR019787 -
Gabi4459g00010 961 PANTHER AUTOIMMUNE REGULATOR 82 958 - -
Gabi4459g00010 961 SMART PHD_3 694 746 IPR001965 -
Gabi4459g00010 961 SMART PHD_3 603 644 IPR001965 -
Gabi4459g00010 961 Gene3D - 788 956 - -
Gabi4459g00010 961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 669 IPR013083 -
Gabi4459g00010 961 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 842 941 IPR016181 -
Gabi4459g00010 961 SUPERFAMILY FYVE/PHD zinc finger 590 645 IPR011011 -
Gabi4459g00010 961 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 749 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4459g00010 Gabi-Chr4459 113090 120858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4459g00010 269 958 PHD Transcription Factor Family AT2G36720 46.936 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi4459g00010 TDBD 2.9e-15 No_clan